Shewanella cyperi: JYB88_11695
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Entry
JYB88_11695 CDS
T07829
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
scyp
Shewanella cyperi
Pathway
scyp00521
Streptomycin biosynthesis
scyp00523
Polyketide sugar unit biosynthesis
scyp00525
Acarbose and validamycin biosynthesis
scyp00541
Biosynthesis of various nucleotide sugars
scyp01100
Metabolic pathways
scyp01110
Biosynthesis of secondary metabolites
scyp01250
Biosynthesis of nucleotide sugars
Module
scyp_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
JYB88_11695 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
JYB88_11695 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
JYB88_11695 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
JYB88_11695 (rfbB)
00525 Acarbose and validamycin biosynthesis
JYB88_11695 (rfbB)
Enzymes [BR:
scyp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
JYB88_11695 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
adh_short
Sacchrp_dh_NADP
KR
Gp_dh_N
Motif
Other DBs
NCBI-ProteinID:
QSX28921
UniProt:
A0A975AJP1
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All DBs
Position
complement(2696038..2697135)
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AA seq
365 aa
AA seq
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MKILVTGGAGFIGSAVVRHIINNTQDSVINVDKLTYAGNLESLVSVEKDERYAFEQVDIC
DRAELDRVFDEHKPDAVMHLAAESHVDRSIIGPADFIQTNIVGTYTLLEATRAYWNDLSA
GEKTAFRFHHISTDEVYGDLPHPDEVRNSEELTLFTETTPYAPSSPYSASKASSDHLVRA
WLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKSLPIYGKGDQIRDWLYVEDHA
RALYKVVTEGLIGETYNIGGHNEKKNLEVVQTICEILDELMPKDAPYADQITYVTDRPGH
DRRYAIDACKMSKELNWLPEETFETGLRKTVQWYLDNQIWSQRVQDGSYQRERLGVISSS
QEGDK
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgaagattttagtcacaggtggagccggttttataggctctgcggtcgttcgtcacatc
atcaataatactcaggatagcgtaattaatgtcgacaaattgacttacgctggcaatctt
gagtcacttgtcagcgttgagaaagatgaaagatacgcttttgagcaagtcgatatctgt
gatcgagctgaactagatagagtctttgatgagcacaagccagatgctgtaatgcatctc
gctgcagagtcgcatgtagaccgttcaataataggtccagctgactttattcagaccaac
atcgttggtacttacacccttcttgaagcgactcgtgcatattggaatgatctatctgca
ggtgaaaagaccgcttttcgttttcatcatatttctacagatgaggtttatggtgactta
cctcatccagatgaagtgcgaaattcagaagagttaaccctattcactgaaactactcct
tatgcgccaagcagtccttattcagcatctaaagcatctagtgatcacctcgttcgcgct
tggttgcgcacgtatggtttgccaacaattgtgaccaattgctcaaataattatggtcct
taccactttcctgaaaaacttattcctcttgtgattttaaatgcattggaaggcaagtct
ttgcctatttatggtaaaggtgatcaaatccgtgattggctatatgtagaagatcatgct
cgtgcgctatataaggtggttactgaaggcttgattggtgaaacctataacattggcggt
cataatgaaaagaaaaatttggaagtagttcaaactatctgtgaaattttagatgaatta
atgcctaaggatgctccttatgcagaccaaattacttatgtgacagatcgtccaggtcat
gaccgtcgctatgccattgatgcctgcaaaatgagcaaagagctgaactggttgcctgag
gagacgttcgaaactggtcttcggaaaacggtacagtggtatcttgataaccagatttgg
agtcaacgtgtacaagatggttcttatcaaagagaacgtttaggcgtaattagtagctct
caggaaggtgataagtaa
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