Shewanella cyperi: JYB88_12190
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Entry
JYB88_12190 CDS
T07829
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
JYB88_12190 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyp03400
]
JYB88_12190 (xseA)
Enzymes [BR:
scyp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
JYB88_12190 (xseA)
DNA repair and recombination proteins [BR:
scyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
JYB88_12190 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
SlyX
Motif
Other DBs
NCBI-ProteinID:
QSX29010
UniProt:
A0A975AJF0
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All DBs
Position
2802991..2804349
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AA seq
452 aa
AA seq
DB search
MQVPKNSIYTVSRLNGEVRQLLEGQLGKIWLSGEISNFSAPASGHWYLTLKDSQSQIRCA
MFKGRNTAVSFRPQNGQQVIVHGGISVYEPRGDYQLLLDAMLPAGDGLLAQQYEALKLKL
ASEGLFAATTKRPLPAHVQRIGVITSPTGAAIRDVLNVLKRRDPSLEVVIYPTAVQGTGA
DKEIIRAIELANQRLEVDVLLLTRGGGSLEDLWCFNSEALAHAIYNSALTVVSAVGHEVD
TTIADYVADVRAPTPSAGAELLSQDQDYKRQRLSALLARLGQGWRHYRLSKAERLARLQA
RLDRQDPKRALERQMQRVDELALRLEAALERKLAHATLTLERLGARLSRQSPAQKLALAR
QRLGYLDSRLHDAMADGLADAKQRLAANAHRLESVSPLATLSRGYSITKDSEGRVLEQAQ
DAAVGELIHSRLRQGTLVSRIEAIDLEANSNG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtccctaaaaactcgatttataccgtttcccgcctcaatggcgaggtacggcaa
ttgctggaaggacagctgggcaagatctggctcagcggcgagatctccaatttctccgcc
cccgcctcgggtcactggtatctgactttgaaggacagccagtcgcagatccgctgcgcc
atgttcaaaggtcgcaacactgccgtcagcttccggccccagaacggccagcaggtgata
gtgcacggcgggatcagcgtctacgaacccaggggcgactatcagctgctgctggacgcc
atgttaccggccggcgatggcctgttggcccagcaatacgaggcgctgaaattaaagctg
gccagtgaaggcctatttgccgccaccaccaaaaggccgctgccggcccatgtgcagcgc
ataggggttatcacctcccccacaggtgccgccatccgcgatgtgcttaatgtgttgaaa
cggcgcgatccgtcgcttgaagtcgtcatctaccccacggccgtgcagggcacaggggcc
gataaggagattatccgtgccatagagctggccaatcaaaggctggaggtagacgtactg
ctgctgacccggggtggtggcagcctggaagatctctggtgcttcaacagcgaggcgctg
gcacatgccatctacaacagtgctttgacagtggtcagcgccgttggtcatgaggtggac
accaccatcgccgactatgttgccgatgtgcgcgcccccaccccttccgccggtgccgag
ctgctgtcccaggatcaggactacaaacgccagcgcctgagcgcgctgctggcgcgcctg
ggacagggctggcgccattaccgcttgtcaaaggccgaacgcctggcaaggctgcaggca
aggctcgacaggcaggatcccaagcgggctctggagcggcagatgcagcgggtggatgag
ctggcactgcgactggaagcggcccttgaacgcaaactcgcccatgccaccctgacactg
gagcgcctcggagcccgtctgagccgtcaatcccccgcccaaaaattggccctggcacgc
cagcgccttggctatctcgacagccgcttgcatgatgccatggcggacggccttgcagac
gccaaacagcggctggcggccaatgcccacagattggagagcgtcagccccctggcgacc
ctgtcacggggttattccatcaccaaggacagcgaggggcgggtgctggagcaggcgcag
gacgcggccgttggcgagcttattcacagccggctcagacaggggacccttgtgtcccgc
atcgaggctattgacttagaggcgaactcaaacggctaa
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