Shewanella cyperi: JYB88_13210
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Entry
JYB88_13210 CDS
T07829
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03030
DNA replication
scyp03430
Mismatch repair
scyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYB88_13210 (holA)
03430 Mismatch repair
JYB88_13210 (holA)
03440 Homologous recombination
JYB88_13210 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyp03032
]
JYB88_13210 (holA)
03400 DNA repair and recombination proteins [BR:
scyp03400
]
JYB88_13210 (holA)
Enzymes [BR:
scyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JYB88_13210 (holA)
DNA replication proteins [BR:
scyp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JYB88_13210 (holA)
DNA repair and recombination proteins [BR:
scyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JYB88_13210 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
KaiA_N
GATase_4
DUF4388
DUF6063
Motif
Other DBs
NCBI-ProteinID:
QSX29183
UniProt:
A0A974XL03
LinkDB
All DBs
Position
3007277..3008305
Genome browser
AA seq
342 aa
AA seq
DB search
MRVYPDQLHRHLGQLAQCYLLFGDDPWLQEHCKDQLLAAARQQGFEERVQLEQDNSFNWQ
DLANEWQAMSLFASRRIIELHLPQAKPGSEGSAMLLNLLQAPNPDILLLLRGPKLAAEQT
NSKWFKALDSAGIYLPCLTPEGPQFQRWLDGRTQAHRLSLSPDARTLLLSLYEGNLLAAD
QAMQLLALLSPGRRIEAAELEQYFDDQSRFTVFQLGDALLGNQQARVQHMLAQLKAEGTA
LPIVLWALFRELTTLVALQGARQRREPLQPLWSKYRIWDKRQPLYEASLKRLELTQLEAM
LAMAGAIELKLKQRGEEDWTGISHLCLLFDPAAHAALGHLGL
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtctatcctgatcaactgcaccgccatctgggccaattggcccagtgctatctg
ctgtttggcgacgatccctggttgcaggaacactgcaaggatcagctgctggccgccgcc
cgccagcagggcttcgaggagcgggtacaattggagcaggataacagcttcaattggcag
gatctggccaacgaatggcaggccatgagcctgttcgccagccgccgcatcatagagctg
cacttgccccaggccaaacccggcagcgaaggcagcgccatgctgctgaacctgctgcaa
gctcccaatcccgatattttactgctgctgcgcggccccaaactggcggccgagcagacc
aacagcaaatggttcaaggccctcgacagtgccggcatttacctgccctgcctgacaccg
gaagggccgcagtttcagcgctggcttgacggccggacccaggcccacagactgagcctg
tctccggatgcccgcaccctgctgctaagcctgtacgaaggcaatttgctggcggcggat
caggccatgcagctgctggcgctgttgagcccgggaaggcgcatcgaggccgccgagctt
gagcagtactttgacgatcaatcccgcttcactgtgtttcagctgggcgatgccctgctt
ggcaatcaacaggcccgggtgcagcacatgctggctcagctgaaggccgaaggcacggca
ctgccgattgtgctctgggccctgttccgggaactgaccaccttggtggcattacagggg
gcgcgccagcgccgcgaaccattgcagccgctgtggagcaagtatcggatctgggataaa
cgccagcccctgtatgaggccagcctcaagcgcctggagcttacccagctggaagctatg
ctggccatggccggggccattgagctgaaactcaagcaacggggagaagaggactggacc
gggatcagccacctgtgcctgctgtttgaccccgccgcccacgcagcccttggacacctg
ggtctatga
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