KEGG   Shewanella cyperi: JYB88_13230
Entry
JYB88_13230       CDS       T07829                                 
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
  KO
K05515  penicillin-binding protein 2 [EC:3.4.16.4]
Organism
scyp  Shewanella cyperi
Pathway
scyp00550  Peptidoglycan biosynthesis
scyp01100  Metabolic pathways
scyp01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:scyp00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    JYB88_13230 (mrdA)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    JYB88_13230 (mrdA)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:scyp01011]
    JYB88_13230 (mrdA)
Enzymes [BR:scyp01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     JYB88_13230 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:scyp01011]
 Peptidoglycan biosynthesis and degradation
  DD-Transpeptidase (Class B PBP)
   JYB88_13230 (mrdA)
SSDB
Motif
Pfam: Transpeptidase PBP_dimer
Other DBs
NCBI-ProteinID: QSX29187
UniProt: A0A975AJE2
LinkDB
Position
3009887..3011764
AA seq 625 aa
MSPRKRITMHDHAAEASLFKRRALFTFCCVVVLLSVLVANLHHLQVTSFSDYATRSNENR
IRVVPVAPSRGLIYDRNGVLLAENQPFYSLELIPEKVKDIPAVLDELQGLISLSEEERDT
FLEALKFHRRFKPLTLKNRLTEEEVAIFSVNQHRFPGIQVEAGLKRHYPHAELLTHVLGH
VGKINTKDRQALERSDQWQNYAATKDMGKQGVEKFYESLLHGAPGHLEEEVNNRGRTIRV
LKQVPPEPGQDIYLTLDIGLQKKAMELLAGKRGSIVAIDPSDGGVLAMVSSPSYDPNPFV
YGISGKAYSDLLNDRSRPLINRATQGLYSPASTIKPHMALLGLELNAISEKTRVWDPGFW
QIPGVERKYRDWKKWGHGWVDVYHAITESCDIFFYDLVYKIGVDEVSSFMEQFGFGQSSG
IDLFEESAGIMPSKDWKRMRYNQPWYIGDTISVGIGQGYWTTTPLQLANAATIMANHGKR
FTPHLLKSIKDSTALINNPVDEQPPIALRNARNWDIINEAMRQTAMKSRFADAPYTAAMK
TGTAQVYSVAQDEKYDAAKVEEHLRDNALVVAYAPFEHPKIVLAIVMENAGWGGQNAGPV
ARAMLDEFMLRDKWELKPSEKVSHE
NT seq 1878 nt   +upstreamnt  +downstreamnt
gtgtcccccagaaagcggataaccatgcacgatcacgccgccgaggcgtcactgttcaaa
cgtcgcgccctgttcactttctgctgtgtggtggtgctgctgagcgtattggtggccaac
ctgcatcatttgcaggtcacctccttcagtgattacgccacccgctccaacgagaaccgc
atccgcgtggtgccggtagcgccgagccgcggccttatctatgaccgcaacggtgtgctg
ctggcggaaaaccaacccttctattccctggagctgatcccggaaaaggtgaaagacatc
ccggccgtactggatgaactgcagggtctcatatctctgtcggaagaagagcgggacacc
ttcctcgaggcgctcaaattccaccgccgcttcaagccactcaccctgaagaatcgcctt
acagaggaagaagtggccatcttcagcgtcaatcagcacagatttcccggcattcaggtg
gaggccggtctcaaacggcactacccccacgctgaactgctgacccatgtgcttggccat
gtgggcaagatcaacaccaaggatcgtcaggcactggaacgcagcgatcaatggcaaaac
tacgccgccaccaaggacatgggcaagcaaggtgtcgagaaattttacgaaagcctgctc
catggcgcccccggccacctggaagaagaagtcaacaaccgcggccgcaccatacgggtg
ctcaagcaggtgcccccggaacccggccaggatatttacctgaccctggatatagggctg
caaaagaaagccatggagctgctggcgggcaaacgcggctccatagttgccatcgacccc
agtgacggtggcgtactggccatggtgtcgagccccagctatgaccccaatccctttgta
tacggcatcagcggtaaggcctacagcgacctgctcaatgacagatcccgccccctgatc
aaccgcgccacccagggtctgtattcaccggcctccaccatcaagccacacatggcactg
ctgggcctggagctcaacgccatcagtgaaaagacccgtgtatgggatcccggcttctgg
caaattcccggcgtggaacgtaaataccgcgactggaagaagtggggacacggctgggtc
gatgtctaccacgccatcactgaatcctgcgacatattcttctacgatctggtgtacaaa
attggggtcgatgaagtgtcgagctttatggagcaattcggcttcggccagagcagcggc
attgatctgtttgaagagtctgccggcatcatgccttccaaagactggaagcggatgcgc
tataaccagccatggtacataggcgacaccatttctgtgggtataggccaggggtactgg
accaccacccccttgcagctggccaatgccgccaccatcatggccaatcacggcaaacgc
ttcacgcctcacttgctcaagtccatcaaggacagtactgcgcttatcaacaatcctgtg
gatgaacagccccccatagcgctgcgcaatgcccgcaactgggacattatcaacgaagcc
atgcgccagacggccatgaaatcgcgcttcgccgatgccccctacactgcagcgatgaaa
accggcacggcccaggtgtacagcgtggcccaagatgaaaagtacgatgccgccaaggtc
gaagagcacctgcgcgacaacgctctggttgtggcctacgcaccatttgagcaccccaaa
atcgtgctcgccatagtgatggaaaacgccggttggggtggccagaacgccggtcccgtg
gcccgggccatgctggatgaattcatgctcagggacaaatgggaattaaaaccaagcgag
aaggtaagtcatgaatag

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