Shewanella cyperi: JYB88_13250
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Entry
JYB88_13250 CDS
T07829
Name
(GenBank) serine hydrolase
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
scyp
Shewanella cyperi
Pathway
scyp00550
Peptidoglycan biosynthesis
scyp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
JYB88_13250
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
scyp01002
]
JYB88_13250
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
scyp01011
]
JYB88_13250
Enzymes [BR:
scyp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
JYB88_13250
Peptidases and inhibitors [BR:
scyp01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
JYB88_13250
Peptidoglycan biosynthesis and degradation proteins [BR:
scyp01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
JYB88_13250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
QSX29190
UniProt:
A0A975AJL3
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All DBs
Position
3014736..3015911
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AA seq
391 aa
AA seq
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MKLLERFTPKSLLLIGLVSVSAHAAPPMVVPDAPTVAAKAFVLMDYYTGQVIAESNAYES
LNPASLTKMMTSYVIGQEIKAGNISPQDDVTVTQNAWSKNFPDSSKMFIEVGKTVKVEDL
NRGIIIQSGNDACVAMAEHIAGTEGAFVDLMNSWAKQLGMRDSYFENSHGLDSDNHKTTA
YDMALLGAALIRDVPEEYKVYSEKYFTFNGIKQYNRNGLLWDNSLNVDGIKTGHTSGAGY
NLVASATQDGMRLISVVMGTASEAARKAESKKLLNYGFRFFETISPYKAGDTFVTQKIWY
GDRETVSLGLATDTPITISRGKGKDLQANFELTKELSAPLAKGETVGRIFFQLDGKDIAQ
FPLVTLEEVNEGSWFSKLMDYFKQLIAGWLG
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgaaattacttgaacgcttcaccccaaaatcgctgcttcttattggcctggtgtccgtc
tccgcccatgcagcccctcccatggtggtaccggacgcaccaaccgtggccgccaaggct
tttgtgctgatggactactacacgggccaggtcattgccgaaagcaacgcctatgagagc
ctgaaccccgccagtctgaccaagatgatgaccagttatgtgataggtcaggagatcaag
gccggcaatatcagcccccaggacgatgtgaccgtgacccagaacgcctggtcgaagaat
ttcccagactcctccaagatgtttattgaggtgggcaagacggtcaaggttgaagatctc
aatcgcggtatcatcatccagtccggcaacgacgcctgtgttgccatggccgagcatatt
gccgggaccgaaggcgccttcgttgacctgatgaactcctgggccaaacagctgggcatg
cgcgacagctactttgaaaactcccacggtctggattcggacaaccacaagaccacggcc
tatgacatggcattgctcggtgcagcgcttatccgtgatgtccccgaggagtacaaggtt
tattccgaaaaatatttcacttttaacggtatcaaacagtacaaccgcaacggtctgctg
tgggacaacagcctgaatgtggacggtatcaagacaggtcacacctcgggtgccggttac
aacctggtggcatcggccactcaggatggcatgcgtctgatttctgtggttatgggtaca
gccagcgaagccgcccgcaaggccgaaagcaaaaagctgctcaactacggtttccgcttc
ttcgaaaccatcagcccctacaaggcgggcgacaccttcgttacccagaaaatctggtac
ggcgatcgtgaaaccgtcagcctgggtttggctaccgacactcctattaccatcagccgc
ggcaagggcaaagatctgcaggccaatttcgagctgaccaaggagctgagcgcacctttg
gccaagggcgaaaccgtaggtcggatcttcttccaactggatggcaaggacatagcccaa
ttcccgctggttaccctggaagaagtcaatgaaggcagctggttcagcaagctgatggat
tacttcaagcaacttattgccggctggctcggctaa
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