Shewanella cyperi: JYB88_13530
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Entry
JYB88_13530 CDS
T07829
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
scyp
Shewanella cyperi
Pathway
scyp03410
Base excision repair
scyp03430
Mismatch repair
scyp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYB88_13530 (recJ)
03430 Mismatch repair
JYB88_13530 (recJ)
03440 Homologous recombination
JYB88_13530 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyp03400
]
JYB88_13530 (recJ)
DNA repair and recombination proteins [BR:
scyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JYB88_13530 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JYB88_13530 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYB88_13530 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QSX31916
UniProt:
A0A974XRE2
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All DBs
Position
complement(3077308..3079032)
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AA seq
574 aa
AA seq
DB search
MYHQIVRRPQVDDSHLPSHLHPLLKQLLARRGTKAEECEPELNRLLRPETMKGLAAAAVL
VADAMAAERKILIVGDFDADGATSTSVCLLALAMMGAGNTDFLIPNRFDFGYGLSVPLVA
VAKERGAELLITVDNGISCVEGVAAAKAAGMQVVITDHHLPGAELPLADAIVNPNQPGCS
FASKSIAGVGVAFYLMLALRAELRSRDWFISKGLTEPNLACLLDIVALGTVADVVSLDAN
NRILVDAGLKRVRSGRCRPGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMSLG
VETLLCDDFMQARRMAAELDGLNAERRELEAGMQQEALASLQRLSLADSELPWGIALYRD
DWHQGVIGILASRIKDRYHRPVIAFADAGDGEIKGSARSIKGLHMRDLLELINSRHPGLL
LKFGGHAMAAGLSLRATDFGAFAAAFEQAVQQLLAPEQLTGEILSDGELEPRWLTLETAE
LLRGAGPWGQGFEEPLFDGRFRLLQQRLVGDKHLKMVLETRCGSLMLDAIAFNIDTAIWP
DAGIREVQLAYRLDVNEFRGNQSLQLLVEQLQPL
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgtatcaccagatagtccgacgcccccaggtggatgacagtcatctgccaagccattta
catcccttgctcaaacagctgctggcccgacgcggaaccaaggccgaagagtgtgagccg
gaattaaaccgtttactcaggccagagaccatgaaggggctggcagctgcggccgtattg
gtggccgatgccatggcggcggagcgaaagattttgatcgtgggtgattttgatgccgac
ggcgccacctcaaccagcgtctgtctgctggcgctggccatgatgggggccggcaacacc
gactttttgatccccaatcgttttgactttggctacggcctgagtgtgcccctggtggcg
gtggcgaaagagcgtggagccgagctgctgatcacagttgataatggcatttcctgtgtt
gagggagtggcggccgccaaggcagccggtatgcaggtggtcattacggatcatcacctg
ccgggcgctgaattgccgcttgccgacgccatagtcaatcccaaccagccgggttgttcc
tttgccagcaagtccattgccggggttggggtggccttctaccttatgctggcgctgcgg
gccgagctcagaagccgcgattggtttatctcaaagggactgacggaacccaacctcgcc
tgcctgctggacattgtggccctgggcacagtggccgatgtggtcagcctggacgccaat
aaccgcattttggtggatgcgggcctcaaacgggtgcgcagcggtcgctgtcgtcccggc
attaccgccttactggaagtggccaagcgtaatcccgcccggattgtggcctcggatttt
ggttttgccgtcggtcccaggctcaatgccgccggtcgtctcgatgagatgtccctcggg
gttgaaaccctgctgtgtgacgatttcatgcaggccagacgcatggccgccgagcttgac
ggtctcaacgccgagcgccgtgaactggaggccgggatgcagcaggaggcactggccagc
ctccagcgtctgagcctggcagacagcgaattgccctggggcatagccctgtaccgggat
gactggcaccagggcgtgattggcatactggcatcgagaattaaggacaggtatcacagg
cctgtgattgcctttgccgatgccggcgatggcgaaatcaagggctcggcccgttccatc
aagggcctgcatatgcgcgatctgctggaactgatcaacagccgtcatccggggctgctg
ctcaagttcggtggccatgccatggcggcgggcttaagcctgagggccacggattttggc
gcttttgctgccgcctttgagcaggcagtgcagcagctgctggcgcctgaacaattaacc
ggtgaaattttgagtgacggtgaacttgagccccgctggttaaccctggagactgccgag
ctgctgcgcggcgccggtccctggggccagggatttgaagagccgttatttgacggccgg
tttcgcttgttgcaacaacgactggtgggcgacaaacatctgaaaatggtgctggagacc
cgttgtggcagcctgatgcttgatgccattgccttcaatatagacacagccatctggccc
gatgccggtatacgcgaggtgcaactggcctatcggttggatgtgaacgaatttcgcggc
aatcagagcctgcagctgctggtggagcagctgcagccgctgtga
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