Shewanella cyperi: JYB88_16275
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Entry
JYB88_16275 CDS
T07829
Symbol
hemB
Name
(GenBank) porphobilinogen synthase
KO
K01698
porphobilinogen synthase [EC:
4.2.1.24
]
Organism
scyp
Shewanella cyperi
Pathway
scyp00860
Porphyrin metabolism
scyp01100
Metabolic pathways
scyp01110
Biosynthesis of secondary metabolites
scyp01120
Microbial metabolism in diverse environments
scyp01240
Biosynthesis of cofactors
Module
scyp_M00121
Heme biosynthesis, plants and bacteria, glutamate => heme
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
JYB88_16275 (hemB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scyp04147
]
JYB88_16275 (hemB)
Enzymes [BR:
scyp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.24 porphobilinogen synthase
JYB88_16275 (hemB)
Exosome [BR:
scyp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
JYB88_16275 (hemB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALAD
CBP_BcsN
Motif
Other DBs
NCBI-ProteinID:
QSX29724
UniProt:
A0A974XSM3
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All DBs
Position
3658536..3659546
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AA seq
336 aa
AA seq
DB search
MNIITSAFPQRRMRRMRKHEFSRRLMAENTLTVNDLIYPMFVLEGNHRSEQVASMPGIER
YSIDLLLKEAEQLVELGIPLIALFPVTPLEKKSLLAEEAYNPDALAQRAVRALKSEFPQL
GVMTDVALDPFTTHGQDGIIDDTGYILNDITTEILVKQALSHAEAGADIVAPSDMMDGRI
GAIRQALEAAGHVNTQIMAYSAKYSSNYYGPFRDAVGSAGNLKGGNKHSYQMDPANSDEA
LHEVALDIQEGADMVMVKPGMPYLDIVHRVKTELAVPTFAYQVSGEYAMHMAAIQNGWLA
EKAIVMESLLCFKRAGADGILTYFAKRAAQWLKDAK
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
gtgaacattattaccagtgctttcccacaacgcagaatgcgccgcatgcgcaaacacgag
ttcagccgtcgcctgatggccgaaaataccctgacggtcaacgacctgatctatcctatg
tttgttttggaaggcaaccaccgcagcgagcaggtggcgtccatgccgggcattgagcgc
tactccatagacctgctgctcaaagaagccgagcagttggttgagctgggcattccgctg
attgccctgttccccgtgactccgctggaaaagaaatccttgctggcggaagaagcctac
aacccggatgccctggctcagcgcgccgtgcgggcacttaaaagtgagtttccgcagctg
ggggtgatgacagacgtggccctcgaccccttcaccacccacggtcaggatggcatcata
gatgacactggctacatactcaatgacatcaccacagagatcctggtgaagcaggccctg
tcacatgccgaagccggtgccgacatagtggcgccctccgacatgatggacggtcgtatc
ggtgccatacgtcaggccctggaagccgccggtcatgtgaatacccaaatcatggcctac
tcggccaagtactcttccaactactatggtccattccgcgatgcggtcggttccgccggt
aaccttaagggcggcaacaaacacagctaccagatggatccggccaacagcgacgaggca
ctgcacgaagtggcgctggacatccaggaaggggccgacatggtgatggtcaagccgggc
atgccctatctcgacatagtccacagggtcaagaccgagctggcggtgcccaccttcgct
tatcaggtcagcggcgagtacgccatgcacatggccgccattcagaacggttggctggcg
gaaaaggcgatagtgatggagtcattgctgtgcttcaagcgcgccggtgccgacggcatc
ctcacctatttcgccaagcgtgccgcccagtggctcaaggatgccaaataa
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