Shewanella cyperi: JYB88_16295
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Entry
JYB88_16295 CDS
T07829
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYB88_16295 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyp03019
]
JYB88_16295 (rhlB)
Enzymes [BR:
scyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JYB88_16295 (rhlB)
Messenger RNA biogenesis [BR:
scyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYB88_16295 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSX29728
UniProt:
A0A974XLZ9
LinkDB
All DBs
Position
complement(3664332..3665648)
Genome browser
AA seq
438 aa
AA seq
DB search
MSETHLSQQKFADLPLREEVKQALIENGFEYCTPIQALSLPVLLAQKDIAGQAQTGTGKT
LAFLVATFNHLLNSPVPENRQLNQPRAIVMAPTRELAIQIAKDAQLLSKHTGLKVAIVYG
GEGYETQRKVLDKGVDILIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSM
EDKLKLLHSLIEEDWPEKAIVFANTKHQCEKLWASLEGDGHRVGLLTGDVPQKKRIRILE
QFTKGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA
CEEYALNLPDIETYIQHSIPVSSYDRSALIEDLPPPAHIHRKHPVGARGGRDRGGRPSGA
HRSGGSRPPRHDRTRRHS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttatcccaacagaaatttgccgaccttcccctgcgtgaagaagta
aaacaggcacttatcgaaaacggcttcgaatactgcaccccgatccaggccttatctttg
cctgtattgttggcgcaaaaagacatcgccggccaggcgcaaactggcacaggcaagacc
ttggcctttttggtggccacctttaaccatctgctgaattccccagttcctgaaaaccgt
cagctgaatcagccccgcgccatcgtcatggcgccgacccgtgaactggccatccaaatt
gccaaggacgcccaattgctgtccaagcacaccggcctcaaggtggccattgtctacggc
ggcgaaggctatgaaacccagcgcaaggtgctggacaagggcgtggatatactgatcggc
accactggccgcatcatagattatgtccgtcagggtgtaattaatctgggcgccattcag
gccgtggtactggatgaggccgatcgcatgttcgatcttggctttatcaaggatatccgc
ttcctgttccgccgcatgcccgaggccaatcagcgtctgaatatgctgttttctgccact
ttgtcgatgaaggtgcaggaactggcttacgaccacatgaacgatccggtcaaggtggaa
attgcgcccgaggaaaagacctcccgcaacatcaaggaagagatcttctatccctcgatg
gaagacaagctcaagctgctgcactccctgattgaagaagactggccggaaaaagccata
gtctttgccaacaccaagcaccagtgtgaaaaactctgggccagcctggaaggcgatggt
cacagggttggcttgctgaccggtgacgtgccgcagaagaagcggatccgcattctggaa
cagttcaccaagggcgagttggatatcctggtggcgaccgatgtggccgcccgtggcttg
cacatttccgatgtgtcccacgtatacaactacgatctgcctgacgattgcgaagactat
gtgcatcgcattggccgtaccggtcgtgcgggtcagaaaggggtttccgtcagctttgcc
tgtgaggaatacgccctgaacctgccggatatcgaaacctatatccagcactccattccg
gtcagctcctatgatcgcagtgccctgattgaagacttgccacctccggcacatatccat
cgcaagcaccctgtgggtgcccgtggtggacgcgaccgcggcggccgtccatcgggagcc
catcgcagcggcggcagccgtccgccaaggcatgacaggacccgcagacactcttga
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