KEGG   Shewanella cyperi: JYB88_17500
Entry
JYB88_17500       CDS       T07829                                 
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
  KO
K03089  RNA polymerase sigma-32 factor
Organism
scyp  Shewanella cyperi
Brite
KEGG Orthology (KO) [BR:scyp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:scyp03021]
    JYB88_17500 (rpoH)
Transcription machinery [BR:scyp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     JYB88_17500 (rpoH)
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r1_2 2Fe-2S_thioredx Fe_dep_repress GntR UCR_14kD
Other DBs
NCBI-ProteinID: QSX29947
UniProt: A0A974XK78
LinkDB
Position
complement(3945132..3945989)
AA seq 285 aa
MTEQTQSMALMVPQGSGSLEAYIHSVNSMPMLEAEEEYALAKRLQATGDLQAAKQLIMSH
LRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPEVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNLRKAKQRLGWFSDEEVTMVAENLGVSKADVTEMESRMAA
QDPAFDLLNDSDDEHDFAPVHYLEDHSSDLASQVENDNWESNSQARLLSAIKTLDERSQH
ILRARWLDDDKITLQELADTYQVSAERIRQLEKNAMNKLKACMEA
NT seq 858 nt   +upstreamnt  +downstreamnt
atgactgaacaaacgcaatcaatggcactgatggttccccagggaagcggcagtcttgaa
gcctacattcattcggtcaacagcatgcccatgctggaggcggaggaagagtacgcgctt
gccaagcgtttacaggcaaccggggacctgcaggcggcgaaacagctgattatgtcgcat
ctgcgctttgtggtgcatgtggccaagggctatgcaggttatggcctgccccaggccgat
cttatccaggaaggcaacataggcctgatgaaggccgtcaagcgtttcgaccccgaagtg
ggtgtgcgcctggtgtcttttgccgtgcactggatcaaggctgaaattcacgaatatgtg
ctgaaaaactggcgcatagttaaggtggctaccaccaaggcccaacgtaaactcttcttc
aacctgcgcaaggccaagcaacgtctgggctggttcagcgatgaggaagtcaccatggtg
gcggaaaacctcggggtgtccaaggcggatgtgaccgagatggaatcgcgcatggcggcc
caggatccggccttcgatctgctcaacgacagtgacgatgagcatgattttgcgccggtg
cattatctggaagaccattcttccgatctggcttcccaggtggaaaacgacaactgggaa
agcaattcccaggcgcgtctgctgtcggccatcaagaccctcgacgagcgcagccagcac
attctgcgggcccgttggttggacgatgacaagatcaccctgcaggagctggccgatacc
tatcaggtgtccgccgagcgcattcgccagttggaaaagaatgccatgaacaagctcaag
gcctgcatggaagcctga

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