Shewanella cyperi: JYB88_18010
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Entry
JYB88_18010 CDS
T07829
Name
(GenBank) long-chain fatty acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
scyp
Shewanella cyperi
Pathway
scyp00061
Fatty acid biosynthesis
scyp00071
Fatty acid degradation
scyp01100
Metabolic pathways
scyp01212
Fatty acid metabolism
scyp02024
Quorum sensing
scyp04146
Peroxisome
Module
scyp_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
JYB88_18010
00071 Fatty acid degradation
JYB88_18010
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
JYB88_18010
09145 Cellular community - prokaryotes
02024 Quorum sensing
JYB88_18010
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
scyp01004
]
JYB88_18010
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scyp04147
]
JYB88_18010
Enzymes [BR:
scyp01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
JYB88_18010
Lipid biosynthesis proteins [BR:
scyp01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
JYB88_18010
Exosome [BR:
scyp04147
]
Exosomal proteins
Exosomal proteins of breast milk
JYB88_18010
Exosomal proteins of breast cancer cells
JYB88_18010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
NUDIX_4
Motif
Other DBs
NCBI-ProteinID:
QSX30042
UniProt:
A0A975AK60
LinkDB
All DBs
Position
complement(4057978..4059771)
Genome browser
AA seq
597 aa
AA seq
DB search
MSLQQFHVVRLLRQQAQSRPNAIALEGFEMASPWQQLSWQEFERRTDRLARQLIAGKLAI
QDKVAILSNNCPQWTVSDVAALKARAVVVPIYPTSTAEQAAYIINDAEAGWLFVDCARSY
ALACELRALCPSLQRIVVFDGAVELAHESDCYLDELLNRPVDEQAGTELELRIAGANLDE
LLTLIYTSGTTGDPKGVMLPHRAFASTVRQHDQRLAVSPGHVSLAFLPLSHVFERGWSFY
VLCRGGHNVYLSDTNRVKEAIAAVRPHTLCVVPRFLEKVYSAVQDKVARAPKTRQALFHW
ALAVGQHQFEVDQGRARSSLWLKLKARIADALVASKLRQVLGGRLRFMPCGGAALDPKVG
AFFNAVNIPVLCGYGLTETTATVTCNTLDNRVPGSNGQTLPEVEVRLGADDEILVRGDTV
MSGYYKRPEDTAAAFQDGWFRTGDAGRLDAAGNLFITDRIKELMKTSNGKYIAPQRVEGK
VGCCPFIEQVAIIADARNYVTALIVPAFETLEAWAREVGLSYESKLELIRHSHVLEHFEA
RLKLMQQELAGFEQIKKFTLLPDAFTMESGLITPTLKLKRKMIYHKYAREISAMYGG
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttcagcaatttcatgtcgtgcgtctgctgcgtcagcaggcccagtcccggcca
aatgccatagcccttgagggctttgagatggcgtcaccctggcagcagctcagctggcag
gagtttgagcggcgcaccgaccgcctggcaaggcaactgattgccggcaagctggccatt
caagacaaggtggccatattgtcgaataactgtccccaatggacagtcagtgacgtggcg
gcgctcaaggcccgagccgtggtggtgcccatctatcccaccagtacggcagagcaagcc
gcctatatcatcaatgatgccgaagccggttggttgtttgttgactgtgcccgcagctac
gccctggcctgtgaactcagggccttgtgtcccagtttgcagcgcatagtggtattcgat
ggtgcggtggagctggcccatgaatcagactgctatttggacgaactgctcaaccgaccc
gttgacgaacaggccgggaccgagctggaactgcgtattgccggcgccaacctggatgaa
ctgctgacccttatttacacctcgggcaccacgggggatcccaagggggtcatgttgccg
caccgggcctttgcctccaccgtaaggcagcacgatcaacgtctggctgtcagtccgggg
cacgtatccctggcctttttgcccctgagccatgtatttgagcgcggctggagtttctat
gtgctctgccgtggcggccacaatgtttacctttcggataccaacagggtcaaggaggcc
atagccgcggtacggccccataccctgtgcgtggtgcctcgctttctggaaaaggtatac
agcgccgtgcaggacaaggtggcccgcgcgcccaagaccaggcaagcactgtttcactgg
gccctggccgtgggacaacaccaatttgaggtggatcagggccgcgcccggagctcattg
tggctcaagcttaaagctcgtatcgccgatgccctggtggcgtccaagttacgccaggtg
ctggggggccggctgaggtttatgccctgtggcggtgcagccctggaccccaaagtgggg
gccttcttcaatgccgtgaatattcccgtactctgtggctatggcctgaccgaaaccacg
gccacagtcacctgcaacacattggataacagggtgcccggctccaatggccagacactg
cctgaggtggaagtgcgccttggggccgacgatgagatcctggtgcgcggcgataccgtc
atgagcggctactacaagcgacccgaggacactgcggccgccttccaggatggctggttc
aggacaggtgatgccgggcgcttggatgccgcaggcaatctctttattaccgatcgcatc
aaggaattgatgaagacctccaacggcaaatacatagcgccgcagcgggtggaggggaaa
gtgggctgttgcccctttatcgaacaggtggccatcatagccgatgcccgcaactatgtg
acggccctgatagtccccgccttcgagacgttggaagcctgggctcgggaggtggggctg
agctacgaatccaagctggaactgatacgtcacagccatgtgctggaacacttcgaggcg
cggctcaagctgatgcaacaggagctggcgggctttgaacagatcaagaagttcaccctg
ttgccggacgcctttaccatggaatcgggactgattaccccaaccctcaagctgaagcgc
aagatgatttatcacaaatacgccagggaaatcagcgccatgtacggcggttaa
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