Kalymmatonema gypsitolerans: NIES4073_01120
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Entry
NIES4073_01120 CDS
T10147
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scys Kalymmatonema gypsitolerans
Pathway
scys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES4073_01120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scys03019
]
NIES4073_01120
03400 DNA repair and recombination proteins [BR:
scys03400
]
NIES4073_01120
Enzymes [BR:
scys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES4073_01120
Messenger RNA biogenesis [BR:
scys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES4073_01120
DNA repair and recombination proteins [BR:
scys03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES4073_01120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
AAA_11
AAA_22
AAA_12
AAA_30
Flavi_DEAD
SLFN-g3_helicase
P-loop_SecA
PG_1098_N
Motif
Other DBs
NCBI-ProteinID:
BAZ19242
LinkDB
All DBs
Position
plasmid1:complement(108805..113811)
Genome browser
AA seq
1668 aa
AA seq
DB search
MQNLLNIESLYVYLDLEINSENNIYRIGLVSLNLTKDFYQEHLNQAYEEIRKLKNSNLAV
CGHNFRRFDYPYLIEQDPQLSSWYIIDTLELSILAFPLQHSHKLNKDYKQSEYSSNNPVE
DAQVTRFLLRQQLEALFKKPDEVQQVYIWLLTCGCEDADLAYQQFFSDNLGLKIEQPAIE
MLPETMLKGINQSYMQQIWSSPQTYNFETRLCVAGLLAWNYECNANESKQVFCDWLRHLN
GFQAVLESLRPLSTDEFVLSSYLEYFEIPSFRPLQEEAVQAIINNESPLVLMPTGGGKSL
CYQLPAFMFYERHKALTVVISPLQALMADQVADLEQAGFFFATFINGNLSAAERRQRLSE
LRSGSKGLLYISPEQLRSMSIRALLEQRPPVLWVIDEAHCVSQWGHDFRPDYRYIPKFIY
ELYQERQLAMPLLALMTATATVAVIEDIKELFAQYQLNINRTIDGATTRDNLTFDVIPVA
GNKEQVLLNQVKEALKLGGSTLIYTTTRKNAEKLAELLKQSHIEAKYYHGKLAKEKKQEV
LQEFKSGKLNVITATCAFGMGINRKDVRSVIHHCMSANLEGYIQEAGRAGRDGEPAVCTL
LFDPKDADTVFRLQSLNQLSEQDLKNVLISTRHIRDLTFGSARDDWFWVTTNEIFQLGDF
DEEFGEESEQQNTKIKAGLHYLEKFGLLERAENFSSFIEFELSHNTFTESIEQFEEYSRM
KDLSRFEADNFERLIQAMHIAKAYCNSNDQPFPLDRLSDEAGISLHDLTARIRELQKAEV
CSFEIPITLVITKGVRGDARNNHERIRQLEDQLLKVLNELFGNENEIQINLRGLASRLDP
DNSKKIRASNIIDILEGWVAQKWLKLSRISIDVVRLGEMEVVEHLPGHKILTTTVLEVLY
QALRDTTGARLPLKYELGKLAKEITQKTQLDWNNEELEVILLWLHQRKIIRLSDGLNLFQ
QSLKVRVIKNASVSTVKRRYPEVEAHYNEQTRRTHYMVQYGQLKLTEQRQQFVSDYFGTN
QEEFLSKYQFLAQEITRPILPEDYNRILESLNPAQKEIVLASDPAIAVIAGPGSGKTRTI
VHRIAYLVKVKQVEPKRILVLAYNRNAVRELRLRLQKLIGEQASRIRVFTFHRLALSLLG
RTLGEYTKNRTMDFDRLLVEACELIEKGEEFEYADEDTQARRIQLLGKLEYIFVDEYQDV
TEKEYRLIKSISGLNESEDKTRSVQINLCVIGDDDQNVFTFKGADTKYILQFQEEYKARR
LLLTENYRSTKNIIETANCLIQNNPIRCKQSLEEQVRINSERQNLRGDPVLALIFNNLSQ
QAGWIKDKVKSWIQAGIAPHEIAILASRWDDLSPIRLLLERESISTYALKSNTIPLVKNR
CTRLLINALQKDYSLVLNPEELVQERFEAFFERTGRSLTEPTVKTLINIAKDLDKERGYG
SEDVVLPISGDEILTAIFEFNENGESFLENNSVLVTSCHGSKGLEFRKVILLTDGFKTNG
NELESERRLFYVAMTRAEEELVICFTKQSTFIQQAALTSQVTAYTENQLPQLMCYFDLTP
SDVYLGYEITKNKQNIIKNLCEHDLIEIRANNHNNTWSIFTRNNDEIGCLSKRGRRFLQQ
KGMSPSQFKFQTNEITVKYIYHHLKRDDISGEILEDWFVVIPQIRVCR
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatttattaaatattgaatcattatatgtttatttagacttagaaattaatagt
gaaaataatatataccgtataggattggtatctctgaatttaacaaaagatttttatcaa
gagcatctaaatcaagcttacgaagaaattaggaagctgaagaatagtaatttagcagta
tgcggtcacaacttccgccgctttgattacccttatctgattgagcaagatcctcaatta
tcttcttggtatataattgacactttagaactatcaatactcgcttttcccctacagcat
tcgcataaactaaataaagattataagcaaagtgaatattcaagtaataatcctgtagaa
gacgcacaggtaactcgattcttacttcgtcaacaattagaagcactatttaaaaagcct
gatgaagtacaacaggtatatatttggctcctgacttgtggttgcgaagatgcagacctt
gcatatcaacaatttttcagtgataaccttggtttgaagattgaacaacccgccatagaa
atgctgccagaaacaatgctaaaaggaataaatcaatcctatatgcagcagatatggtct
agtccacaaacttataattttgagacaagattatgcgtggcgggattattggcttggaat
tatgagtgcaatgccaatgaatcgaagcaggttttttgtgattggctcagacatttaaat
ggtttccaagctgtacttgagagtttgcgtcctttaagtacagatgaattcgttctcagc
tcttacttggaatattttgaaattcccagttttcgacctttacaggaagaagctgtgcaa
gcaattattaataatgagagtccgcttgttctcatgcctactggtggtggcaagtcctta
tgctatcaactgccagctttcatgttctacgaaaggcacaaagcgctgactgttgtcatt
tcaccgctacaagcactaatggcagatcaggtggcagatttagaacaagctgggtttttc
tttgccacttttatcaacggcaatctctcagcagcagaacgtcgtcagcgattatcagaa
ctgcgttctggttccaaaggtttgctgtatataagtcctgagcaattacggtcaatgagt
attcgggcattgttagaacagcgccctccggttctgtgggtgattgatgaggctcactgt
gttagccaatggggtcacgattttcgtcctgattaccgttatatcccgaaatttatttat
gaattatatcaagagcggcagcttgcaatgcctttgttagctttgatgacagcaacagca
actgttgctgttattgaagatattaaagagctatttgctcaataccagttaaatataaat
cgtacaattgatggggcaacaacaagagataatctaacttttgatgtcattccagtagca
ggcaataaagaacaagttttactgaatcaagtaaaagaagctcttaaactaggtggtagt
acgctaatttatactactacacgtaagaatgccgaaaaactagcagaacttctcaaacaa
agtcatattgaagctaaatattatcacgggaaacttgcaaaagaaaaaaaacaggaagtt
ttgcaggaattcaaatcaggtaaattgaacgtaattactgcaacttgtgcctttggtatg
ggcataaaccgtaaagatgtacgctctgtcattcaccattgcatgagtgcaaatttagaa
ggttatatccaagaggcagggcgggcagggcgcgacggagagccagcagtttgtacttta
ctctttgatccaaaagatgctgatacagtttttcgtttgcaaagcttgaaccaactaagc
gaacaagatttaaaaaatgtcttgatctcgaccagacatatccgcgatcttacttttggc
agtgctagagatgattggttttgggtgacaaccaatgaaatctttcaattgggcgacttt
gatgaagagtttggtgaagaatcagagcagcaaaatactaaaataaaagcaggattgcat
tacttagaaaaatttggtttattagaacgagccgaaaacttttcaagctttatcgaattt
gaactaagccataatacctttactgagtctatagagcagtttgaggaatacagccggatg
aaggatttatcccggtttgaagcagacaactttgagcggctgattcaagcaatgcatatt
gcgaaagcttattgtaatagcaacgatcaaccgtttcccctcgaccgtctcagtgatgaa
gctggaattagcttacatgacctgactgccagaatccgtgaactgcaaaaggctgaagtc
tgttcttttgaaataccaattacacttgtgattaccaagggtgtaagaggagatgcccgt
aataatcatgaacgcattcgccagttagaagaccaattactcaaagtgcttaatgagttg
tttggtaatgaaaatgaaatacaaataaatctgcgtggacttgcttctcgacttgaccca
gacaatagtaaaaaaatcagagcatccaacatcatagatattttggaaggttgggttgct
caaaaatggctaaagttaagtagaatttctattgatgtagttcgcttaggagaaatggaa
gttgtagagcatttacctgggcataaaattctaacaactacagtattggaagttttgtat
caagcattgagagatacaacaggggcgagattacctctgaagtacgaattaggtaaactt
gctaaagaaattacccaaaaaactcaacttgactggaataatgaagagttagaagttatt
cttttgtggctgcaccagagaaaaataattcgattaagtgatgggctgaatctctttcaa
cagtcgctgaaagtccgtgtaataaaaaacgcaagtgtttccacagtaaaacgccgttac
ccggaagttgaagctcactataatgaacaaactcgtcgcactcattacatggtgcaatat
ggtcagttaaagttaacagaacagcgtcagcaattcgttagtgattactttggcacaaat
caagaagagttcctttcaaagtaccaatttttggcacaagagattaccagaccgattctt
ccagaagactacaaccgtattctagaatcgcttaaccctgctcaaaaagaaatcgttctt
gcttcagacccagcaatagcagtaatagcaggccctggttctggtaaaacaagaactatt
gttcaccggattgcttatcttgtaaaagttaagcaagttgagccgaagcgtattctcgtt
ttagcttacaaccgtaatgcagttagagaattacggctacggttgcaaaaactgattggc
gaacaagcgtcacgaattcgggtttttactttccaccgtttagccttatcacttttagga
cggacactaggtgaatatactaagaatcgaacaatggactttgatcggcttttggttgaa
gcttgcgaactaattgaaaagggtgaggaatttgaatatgcagatgaagatactcaggca
cgacgaattcaactgttagggaaattagaatatatcttcgttgatgaatatcaagatgtc
accgagaaagaatatcgtttgattaagtcaatttctggcttaaatgaatctgaggataaa
acacgatcagtacaaattaatctctgtgttattggagatgatgatcaaaatgtttttaca
tttaaaggtgctgatactaaatatattcttcaatttcaagaagagtataaagcaagacga
ctactacttaccgaaaattaccgctctacaaaaaacattattgaaactgctaattgtctt
atacaaaataacccaatacgctgtaaacaatctctagaagagcaagtccgtattaactcc
gaacgccaaaatctaagaggagatccagttttggctttaatattcaataatttatcacaa
caagcaggatggattaaagacaaagttaaatcctggattcaagcagggattgctcctcat
gaaatcgctattctagctagtcgttgggatgatttgagtcctattcgcttgcttttagaa
agagaaagtatttctacttatgcacttaagagtaatactatccctttagtaaaaaaccgt
tgtactcgtctactaattaatgctttacagaaagactatagtctagttttaaatcctgaa
gaattagttcaggaaagatttgaggcattttttgagcgtactggtcgtagcttaacagaa
cctactgttaaaactttaataaatattgctaaagatttagataaagaacggggctatggg
tctgaagatgttgtactacctattagtggtgatgaaatattgactgctatatttgaattt
aacgaaaatggtgaatccttcctagaaaataactcagttttagttactagttgtcatggt
tcaaaaggtctggagtttcgtaaagtcatacttttaactgatggatttaaaactaatggt
aatgagcttgaatcagaaagacgactcttttatgtcgctatgactcgcgccgaagaagaa
ttagttatttgttttactaagcagagtacctttatacagcaagctgctttaacttcacag
gtcactgcttatactgaaaatcaacttcctcagttaatgtgttactttgatttaactcca
agtgatgtttatttaggatatgaaatcactaaaaataaacaaaatattattaaaaattta
tgtgagcatgatcttattgaaataagagcgaataatcataataatacttggagtatattt
acaagaaataatgatgaaattggttgtctatcaaagagggggagacgatttcttcagcag
aaaggtatgtcccctagtcaatttaaatttcagaccaatgagatcacagttaaatatatc
tatcatcatcttaaaagagatgatataagtggagaaattttagaggattggtttgttgtc
attcctcaaattcgagtatgcagataa
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