Kalymmatonema gypsitolerans: NIES4073_08700
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Entry
NIES4073_08700 CDS
T10147
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scys Kalymmatonema gypsitolerans
Pathway
scys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES4073_08700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scys03019
]
NIES4073_08700
03009 Ribosome biogenesis [BR:
scys03009
]
NIES4073_08700
Enzymes [BR:
scys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES4073_08700
Messenger RNA biogenesis [BR:
scys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES4073_08700
Ribosome biogenesis [BR:
scys03009
]
Prokaryotic type
rRNA helicases
NIES4073_08700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
DUF2345
Motif
Other DBs
NCBI-ProteinID:
BAZ19997
LinkDB
All DBs
Position
complement(538762..540306)
Genome browser
AA seq
514 aa
AA seq
DB search
MNLSFLDLGISQERVEQLEKLGFTAPTNIQAQAIPHLLGGRDVVGQSQTGTGKTAAFSLP
IIERLDLTQKAVQAVVLTPTRELAIQVHDAISTFMGSQGLRVLAIYGGQSIERQMLQLKR
GVHMVVGTPGRVIDLLERGSLKLDRVKWFVLDEADEMLSMGFIDDVDKILSQAPQERQTA
LFSATMPPSIRQLVNKFLHSPVTVTVEQPKAAPNKINQVAYLVPRHWTKAKALQPILEME
DPESALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQLFERH
NRQSWQVLSIPSRTQIEARQIEKLQVQVREALAGERLASFLPMVSELIEQYDAQAIAAAA
LQIAYDQTRPVWLQSELDIPEEEIMQPSSKPRLRSNNRRGEFSGERPRSAWVASDGSTTE
GDKHSSKPKLRTGRRESSASPKKLGSGTARETAS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttctagatttaggaatttcacaagagcgtgttgagcaattagaaaaa
ttaggctttaccgcaccaactaacattcaagcacaagcaattccccacctattgggtggt
cgtgatgtcgtaggtcaatcgcaaacaggaacaggaaaaacagcggcattttccctaccg
atcatagagcggctggatctgactcaaaaagcagtccaagctgtggttctgacaccgact
cgtgagttagccatccaagttcatgatgctataagcaccttcatgggaagccaaggattg
cgggttttagcaatctacggtggtcaatcgattgagcgccaaatgttacaactcaaacgc
ggcgttcacatggttgttggtacgccagggcgagtcatagacttgctagagcggggtagt
ttgaagctggatcgagtgaagtggtttgtgttagatgaagccgatgaaatgttgagcatg
ggctttatcgacgatgtagacaaaattctctcacaagcacctcaagagcgccagacagcg
ttgttctcggcaactatgccaccttcgattcgccaattggtgaacaagttcttgcactcg
ccggtgacagtgactgttgagcagccaaaagccgctcctaacaaaattaatcaagtcgct
tatcttgtaccgcgtcattggacaaaagccaaagctttacagcctatcttggaaatggaa
gacccagaatcggctttaatctttgtccgcaccagacgtacagcagcagaactcaccaat
caactgcaagcagcaggtcatagtgtcgatgaataccacggtgatttgtcacaacaagca
cgcgaacggttactgacacggttccgcaatcgtcaagtacgctgggtggtcgcaacagat
attgcggcacgaggtttggacgttgaccaattgtcccacgtgatcaacttcgacttaccc
gatagcgtagaaacctacgtccaccggattggtcgtactggtcgagctggtaaggaaggc
acagcaatttctttagtacagccgtttgagcgacgcaagcagcaactgtttgaacgccat
aaccgccaaagttggcaagtcctgtcgattccttcacggacacaaattgaagcacgccag
atagaaaaattgcaagttcaggtgcgcgaagctttagctggcgagcgtttggcttcattt
ttaccgatggtgagcgaactgattgaacaatacgatgctcaggcgatcgctgcggcggcg
ttgcaaatcgcttacgaccaaacccgtcctgtttggctgcaatcagaacttgacattcca
gaagaagagatcatgcagccatctagcaaacccaggttgcgttccaacaatcgtcgtggc
gagttttctggtgaacgccctcgctccgcttgggtagcatcagacggcagcacgacagaa
ggagacaaacacagttccaagcccaaactgcggacaggacgtcgcgagagttccgcgtct
ccgaaaaagctaggttctggtacagctagagaaacagcttcttag
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