Scytonema sp. NIES-4073: NIES4073_09920
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Entry
NIES4073_09920 CDS
T10147
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
scys Scytonema sp. NIES-4073
Pathway
scys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES4073_09920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scys03019
]
NIES4073_09920
Enzymes [BR:
scys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES4073_09920
Messenger RNA biogenesis [BR:
scys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES4073_09920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_22
UTP25_NTPase-like
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAZ20116
LinkDB
All DBs
Position
696939..698285
Genome browser
AA seq
448 aa
AA seq
DB search
MSFSTLGLSNEIIRAVTERGYTEPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLL
HRLSADKSVKGTSNGCPPIRGLILTPTRELAAQVEESVREYGKYLKLNSMVMFGGVSISQ
QKRRLKSSVDILVATPGRLLDHVQQGTVNLSHIEVLVLDEADRMLDMGFIHDIRRILSLL
PKQRQNLLFFATFSDKIKALAARLLNHPTMIEVARRNVTADTVAQKVYQVDRDKKRQLLA
HLIRQENWYQVLVFTRTKYGADRLVKQLIENRIQALAIHGNKSQSARTHALTKFKNGSLQ
VLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVSVDEYPLL
ADIEKLIEQRLPLEVVAGFGANPDTKPEPIPNGHQQKPRTGRHKHPAPSTAKPSPETVAK
KSAARTVADGNKSGGRSSKSRRSAKRDR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctactctcggcttgtccaatgaaattatccgtgccgtcaccgagcgaggg
tacaccgaacccacgccaatccagatgcaggcgatacctgcggtattgtcgggtggtgat
ctgctagctggtgcccaaaccggtactggaaagactgccagcttcaccctgccgctcctg
catcggttgtcggccgacaagagcgttaaaggcacttctaatggatgcccgccgatccga
gggctgattctcaccccgactcgtgaactcgccgcacaggtggaggaaagcgtgcgcgag
tacggcaagtacctgaagctgaactcaatggtcatgttcggcggggtcagcattagtcag
caaaaacggcgtttgaagagcagcgtggatattctggtcgctaccccaggacgactgcta
gaccacgtgcagcagggcacggtgaacctgtcgcacattgaggtgttagtgttggatgaa
gctgatcggatgctagacatgggctttattcatgatatccgccgcattctctcgcttctg
cccaaacagcgacagaacttgctattcttcgccaccttctcggacaaaatcaaagcactc
gccgccaggctactcaatcacccgacgatgatcgaggtggcacgccgcaacgttaccgcc
gacacggtagcacagaaagtctaccaggtagaccgtgacaagaagcgccaattacttgct
cacctgattcggcaagaaaattggtaccaagtgctagtgttcactcgcactaagtatggc
gctgaccgtctggttaagcaattaatcgagaaccgcattcaagcactcgccatccacggt
aacaagagccagtcggcgcgtacccacgctctaacaaagttcaagaatggcagcctacag
gtactggttgcaaccgacattgcggcgcggggtctcgacatcagcgaactgcctcatgtg
gtcaacttcgatctgcccaatgtaccggaggattatgttcatcgtattggtcgcactggt
cgtgctggcgcgtcaggtgaagccgtatcgctcgtgtccgtcgatgaatacccgttgttg
gcagatatcgaaaaactcattgaacagcggttgccattagaagtggtcgctggctttgga
gccaaccccgacaccaagcccgaaccaatcccaaatggacaccaacaaaaacccagaacc
ggacgccacaagcatccggctccctctactgctaaaccgtcaccagagacagtggctaaa
aaatcggcagcgcgaaccgtggcagatggcaacaagtccggtggtcgttcgtccaaatcg
cgccgttccgctaaacgcgatcgctga
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