Kalymmatonema gypsitolerans: NIES4073_25890
Help
Entry
NIES4073_25890 CDS
T10147
Name
(GenBank) ATP-dependent DNA helicase, RecQ family protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scys Kalymmatonema gypsitolerans
Pathway
scys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES4073_25890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scys03019
]
NIES4073_25890
03400 DNA repair and recombination proteins [BR:
scys03400
]
NIES4073_25890
Enzymes [BR:
scys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES4073_25890
Messenger RNA biogenesis [BR:
scys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES4073_25890
DNA repair and recombination proteins [BR:
scys03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES4073_25890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF4423
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAZ21711
LinkDB
All DBs
Position
2584626..2586257
Genome browser
AA seq
543 aa
AA seq
DB search
MAKQRSKQKQIQDIAQKTFGYDSLRPGQQQVIEAVVDGHDTLAVMPTGSGKSAIYQIAAL
LLPGATVVISPLIALQHDQVEAIEEQDVAEAAVVNSTIPNAEREEAFADLEKKKLEFLFL
APEQFNNEEVLARLADAKPSLFVVDEAHCISEWGHDFRPDYLRLGGVIDTLGHPTVLALT
ATASPIVRDEIVERLRMRKPHIFVRGFDRPNIWLGVETFHDEAEKQTALLKRVAATEKPG
IIYAATRKRTEEIAEALCQKGIKAVHYHAGMKASEREQVQAAFMADEAEVIVATTAFGMG
VDKPNVRFVFHYDISDSIDSYYQEIGRAGRDGEEAKAILFYRSNDLNIRRFFASGGKVDF
EEVLQVAEAVQNADAPLEPEDLQEETELSQNKLTKALSRLEEVEAVEILPTGEVIKSEAE
VNQESAASSAALAEERREQFVRSRLEMMRNYAELQDCRRQYLLNYFGEPIQNKCGFCDNC
QAGVTVEETAFQPFPINSSVIHTNFGKGRVMRYEGDKLVILFDKVGYKTFAVELVQGLLK
QVD
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcagcgctcaaagcaaaagcagattcaagacattgcacaaaaaacttttggt
tacgacagcttgcgtcctggacagcaacaagtcatcgaagctgttgttgatggacacgac
actctagctgtaatgcctacaggttctggtaaatcagcaatctaccaaattgctgccttg
ttacttcctggtgcaactgtagtgatttcccctttaattgcccttcagcatgaccaagta
gaagcgattgaggagcaggatgtggctgaagctgctgttgtcaactctaccatacctaac
gcagaacgagaggaggcgtttgcagacttagaaaagaaaaagctagaatttttgtttctc
gccccagaacaattcaataatgaggaagtccttgcacgactagcggatgcaaaaccttct
ctatttgtagtagacgaagctcattgtatcagcgagtggggacatgatttccgtcctgat
tacttgcggttgggtggtgtgattgatacccttggtcatcccactgtacttgccctaact
gctaccgcttcaccgattgtgcgggatgagattgtggaacgtttgagaatgcgcaaaccg
catatattcgtacgtggatttgaccgtccaaatatttggttaggtgtggagactttccac
gacgaagctgagaaacaaactgctttgctcaagcgtgttgccgctaccgaaaagcctggt
ataatctacgctgcaactcgtaagcgcactgaggaaatcgctgaagctttatgtcaaaaa
ggtatcaaagccgtccattatcatgcaggaatgaaagcatcagaacgcgagcaagttcaa
gctgcattcatggctgatgaggcagaggttattgtcgccacgactgcttttggtatgggg
gtagataaaccgaatgtgcgctttgttttccactacgacattagcgattctattgactca
tattatcaggaaattggacgcgccggacgcgatggggaggaggcgaaagcgattctgttt
tatcgttcaaatgacctgaacatccgccgtttttttgccagcggcggtaaggtagatttt
gaggaagttttgcaagtcgcagaagcagtgcaaaacgctgatgcgccacttgagccggaa
gatttacaggaagaaacagaactgtctcaaaataaactcacaaaagctctcagtcgcttg
gaagaagtggaggcggtagaaattttgccgactggcgaggttattaaaagcgaggcagaa
gtcaaccaagaatcagcagcttcttcagccgcactggctgaggaacgacgagaacaattt
gtgcgatcgcgcttagaaatgatgcgaaactacgccgaattgcaagattgtcgtcgccag
tacctgctcaactattttggtgaaccaatacagaacaagtgtggattttgcgataattgc
caagctggagtcactgttgaggagactgcctttcaacctttccctatcaacagcagtgtc
attcacaccaactttggtaaagggcgggtgatgcgctacgaaggcgataaactggtgatt
ttgtttgacaaagtaggctataaaaccttcgctgttgagcttgtgcagggactgctgaag
caagtggattga
DBGET
integrated database retrieval system
