Scytonema sp. NIES-4073: NIES4073_42910
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Entry
NIES4073_42910 CDS
T10147
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
scys Scytonema sp. NIES-4073
Pathway
scys03410
Base excision repair
scys03430
Mismatch repair
scys03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES4073_42910
03430 Mismatch repair
NIES4073_42910
03440 Homologous recombination
NIES4073_42910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scys03400
]
NIES4073_42910
DNA repair and recombination proteins [BR:
scys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES4073_42910
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES4073_42910
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES4073_42910
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAZ23403
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Position
4630633..4632798
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AA seq
721 aa
AA seq
DB search
MLDQSTPEFSRLRQRLPDQRWQISPQKTESAQKLAETTNLPPLINQLLINRGIETKEQAQ
AFLNSGDLILPSPLDDFPDLAMSLELLQWAIAPSAVPEAIAKQEKIAICGDYDADGMTST
ALLLRSLRWLGAQVDYAIPSRMHEGYGINKRIIEEFHSEGVGLILTVDNGISAFEPIARA
RELGLKVIITDHHDIPQQLPPANAILNPKLIRESSPYRGIAGVGVAYILAVSLAQKLGQA
NDDILASMLELFTLGTIADLAPLTGVNRHWVKSGLQQLPKSKLAGVQALIQVSGVQGSGA
KGGHGDESIQNTLREAAQGASTKFKIQNSKSLKPEDIGFRLGPRINAIGRIADPQIVIEL
LTTDDMGIALERAMQCEAINRQRREMCEQIEQEAIAIVETEYLASLPQDRVLVIVQPNWH
HGVIGIVASRLVERYGVPVFIGTFEDEEHIRGSARGIPEFHVFDALEYCQDLLGKFGGHK
AAGGFSLPSENLEGLRSRLSEFANKCLELQHLKPLLKIDTQANLNQIHYELYQQLNVLQP
CGIENPDPVFWTPNVQILEQQIVGKGHLKLTVSQTLDDSPSKIKAIAWRWRDYFPLPPRL
DIAYKLRENHFNGNTTIELELVGVRLPTQSHIFFASPPTPLRTTIEYNQRHYNCGIYKNG
SVPELRIGYPEGKILAVELGHTIALLGTNRQEAIEVDVSQPEYNMIIQTALQALSVLSNE
Y
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
gtgttagaccaatccacgcctgaattttcccgtcttcgtcaacgactacctgatcaaagg
tggcaaatttcccctcaaaaaacagaatcggcgcaaaagctggcggaaactacaaattta
ccgcccttaatcaaccaattgttgataaaccggggtattgaaacaaaagaacaagcacaa
gcttttttaaattcaggagatttgatcttaccttcgcctttggacgactttcctgatttg
gcaatgagtctggagttgttgcagtgggcgattgcgccgagcgcagtgccggaggcaatc
gccaaacaagaaaaaatcgctatctgcggtgactacgatgctgatgggatgacaagcact
gctttacttttgcgtagtctgcgttggttgggcgctcaagtggattatgctattcccagt
cggatgcatgaaggctacggtatcaataaacgcattattgaagaattccatagcgaaggc
gtaggattgattctgactgtggataatggtatctcagcgtttgaaccaattgccagagct
agagaacttggtttaaaagtcattatcaccgaccaccacgacattcctcaacaattaccc
ccagctaacgccattctcaaccccaaacttatacgagaatcttcaccttatcgcggtatt
gctggtgttggcgtcgcttatattttggctgtatccctcgcccaaaaattaggacaggct
aatgatgacatattagcttcgatgctggaactgtttacgttgggaaccatcgcggattta
gcccccttgactggcgttaaccgccattgggtaaaaagtggtttgcagcagttacccaaa
tctaagcttgctggagtacaggcgctgattcaagtgtctggggtgcaagggagtggggca
aaaggaggacacggggacgaatcaattcaaaataccctacgggaagccgcccagggggcg
tctacaaaattcaaaattcaaaattcaaaatctctcaagcctgaggatattggctttcgg
ttgggtccgcgaattaatgcaattggtcggattgctgacccacaaattgttatagaattg
ctaacgactgacgatatgggaatagcgctggaaagggctatgcagtgcgaagccattaac
cgccagcgtcgggaaatgtgcgagcaaattgaacaagaggcaatagcaattgtagaaaca
gaataccttgcttctctaccacaagaccgtgtactagtcattgtgcaacctaactggcat
cacggtgtgattggtattgttgcttctcgtttggtggaacgttacggtgtgccagtgttt
attggtacctttgaggatgaagaacacattcgcggttcagcgcgtggaattccagagttc
catgtatttgatgctttggagtattgtcaggacttgcttggcaaattcggcggacacaaa
gctgctgggggattttctttaccatcagagaatttggagggcttgcgatcgcgtctgagt
gagtttgccaacaagtgtcttgaactccagcacctcaaaccacttttgaaaattgacact
caagccaacctcaatcaaattcattacgagctttatcaacagctgaatgttttgcagcct
tgtggtatcgaaaacccagatccagtcttttggacaccgaatgttcaaatccttgagcaa
caaattgtcggcaaaggtcatctcaagttaaccgtatcacaaactcttgatgattccccg
tccaaaattaaggcgatcgcttggcgctggcgtgactattttcctctaccaccgcgactt
gatattgcttacaaattacgagaaaatcactttaatggcaacacgactatagagttggag
ttagttggcgttaggctcccaactcagtctcacattttttttgcttcaccaccaacgccg
ttaagaaccaccattgagtacaatcaacgccactacaactgtggtatctataaaaatggc
tctgtacccgaattaagaattggatatcctgaaggcaaaatcttagctgttgagctagga
cataccatcgccttgttaggaaccaatcgtcaagaggctatagaggttgatgtttctcaa
cccgaatacaacatgatcattcaaactgcgcttcaagctttatccgttctgagcaacgag
tactga
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