Kalymmatonema gypsitolerans: NIES4073_57970
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Entry
NIES4073_57970 CDS
T10147
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scys Kalymmatonema gypsitolerans
Pathway
scys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES4073_57970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scys03019
]
NIES4073_57970
03400 DNA repair and recombination proteins [BR:
scys03400
]
NIES4073_57970
Enzymes [BR:
scys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES4073_57970
Messenger RNA biogenesis [BR:
scys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES4073_57970
DNA repair and recombination proteins [BR:
scys03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES4073_57970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
GerE
Radical_SAM
Motif
Other DBs
NCBI-ProteinID:
BAZ24897
LinkDB
All DBs
Position
6376044..6378227
Genome browser
AA seq
727 aa
AA seq
DB search
MPTYATQSPMLQNPSLEQALKYYFGYDSFRPGQRQIVEQALQNRDLLIIMPTGGGKSLCF
QLPALLKKGLTVVVSPLIALMQDQVEALRDNGIAATFLNSSLNAHKVRSREEYILSGKVK
LLYVAPERLLSDRFLPFLDLVHHQVGISAFAIDEAHCVSEWGHDFRPEYRQLKLLRKRYP
NIPVLALTATATDRVRADIIQQLGLKQPSIHLSSFNRQNLYYEVRTKTKYAYAEVLELIR
ETEGSGIIYCLTRKKVDEITLKLQHDKISVLPYHAGLTDEERSKNQTRFIRDDVRVMVAT
IAFGMGINKPDVRFVIHFDISRNLESYYQESGRAGRDGEPSRCILFYSYGDVKTIEFLIN
QKPDPQEQLISKHQLRQMIDYTEGTDCRRTIQLGYFGERFAGNCGNCDNCRYPKPVQDWT
IEAMKFLSCVARCKERFGMGHIIDVLRGAKSQKITQYEHDKLSTHGIGKDKTPDEWRMLG
RSLLHQGLLEQTADGYAVLKLNALSWEVMRRQRTVSIAVPVAQKITWEDGDEKAAEVEML
LQRLRTLRKQIADAQSVPPYVIFADSTLKLMAQIQPQTLAQFGKLSGIGSHKVSNYGEKF
LAEIRAYRQEQGLSNQQDNSTRFQDLPSETELLTLQLHQQGFSVAEIAVKRNLRPTTVIR
HLSDLIEKNQSVDFNLLVPVEKQQKILQVLEILGDISLTPIKEYLGDRYSFDEIRLVRGK
WRRESKK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgccgacctatgcaacacagtcacctatgcttcaaaatcccagtttagaacaagcgctg
aaatattactttggctacgacagctttcgccctggacagcgacaaattgtagaacaagcg
ctacaaaatcgggatttactgattattatgcctacaggtggaggaaagtcactgtgcttt
cagctaccggcattgctgaaaaaaggtttaactgtggtggtgtcaccgctgatcgctttg
atgcaagatcaagtggaagcactgcgagataatggaattgccgcaacatttcttaatagc
agtctgaacgcacataaagtgcgatcgcgcgaagaatacatcctcagcggtaaagtgaaa
ttgctgtacgtcgctccagaacgcctactcagcgacagatttctcccatttctcgactta
gttcatcatcaagttggcatttccgcctttgcgattgacgaagcacactgtgtttctgaa
tggggacacgactttcgtccagaatatcgtcaactgaagttactacgcaaacgctaccca
aatattcccgtccttgccctgaccgccacagcaactgatcgcgtccgtgctgatattatc
caacaactcgggctgaaacaacccagcatccatctttccagcttcaaccgccaaaacctt
tactatgaagtccgtaccaaaaccaaatatgcttacgccgaagtgttggaactcatccgg
gaaacagaaggttcaggaattatctattgcttgacgcgtaaaaaagttgatgaaattact
ctcaaactgcaacacgataaaatttcagtcttgccatatcatgccggattaactgatgaa
gaacgtagcaaaaatcaaactcggtttattcgggatgatgtgcgtgttatggtggcaaca
attgcctttggcatgggaattaataaaccggatgtgcgatttgtcattcactttgatatc
tcccgtaatttagaaagttattatcaggaatccggtcgagctggaagagacggagaacca
tctcgctgtatactcttctacagttacggtgatgtcaaaacaattgaatttctgatcaac
caaaaaccagatccccaagaacagttgatttccaaacatcaactgcggcaaatgatagac
tacaccgaaggaaccgactgccgacgtacaattcagttaggttattttggggaacgtttt
gcagggaattgtggcaactgtgacaactgccgttatcctaaaccagtgcaagactggaca
attgaagccatgaagtttttatcttgcgtggctcgatgtaaagaaagatttggtatgggt
catattatagatgtgttgcggggagcaaaaagccaaaaaatcacccaatacgaacacgac
aaactttctacccatggtattggcaaagataaaacaccagatgagtggcgaatgctgggg
cgttctctgttgcaccaagggttgctagaacaaaccgccgatggttacgccgtactaaaa
cttaacgccctgagttgggaagtgatgcggcgacagcgaacagtttccattgcggttcct
gtagcacaaaagataacttgggaagatggcgatgaaaaagccgccgaggtggaaatgctg
ttgcagaggttgcgcactctacgcaaacaaattgctgacgcgcaatctgttccaccctat
gtcatctttgccgattctaccctaaaattaatggcccagatccaaccgcaaaccttagct
caatttggtaaactttctggcataggcagtcacaaagtttctaactatggtgaaaagttt
cttgcagaaattcgcgcttatcgtcaagaacaaggtttgtcaaatcaacaagataattcc
acacgttttcaggacttaccttcagaaactgaattattgactttacagttacaccaacaa
ggttttagcgttgcagaaattgcagtaaaacgcaatcttcgcccgacaacagttattcgt
catctttccgatttaatagagaagaatcagtcagtagatttcaatctgttagttcctgta
gagaagcagcaaaaaattttacaagtcttagaaattcttggtgatatttccctaacgcca
attaaagaatatcttggcgatcgctacagctttgatgaaattcgtttggtaaggggaaag
tggcggcgggaaagtaagaaatag
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