Kalymmatonema gypsitolerans: NIES4073_69530
Help
Entry
NIES4073_69530 CDS
T10147
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scys Kalymmatonema gypsitolerans
Pathway
scys03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES4073_69530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scys03400
]
NIES4073_69530
Enzymes [BR:
scys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES4073_69530
DNA repair and recombination proteins [BR:
scys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NIES4073_69530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAZ26047
LinkDB
All DBs
Position
7702910..7706467
Genome browser
AA seq
1185 aa
AA seq
DB search
MAFSSIVRALGRSPLTTELLSKLNRQQELLLSGIPRLPKGLVASALAQTEGKNLFVVCAT
LEEAGRWTTQLEAMGWQTVHFYPTSEASPYEPFDPETEMTWGQMQVLADLVQFGTDRDKK
DEGDQQAKPSSSPSPKMAIVATVAALQPHLPPAQAFKPFCITLRRGMEFDLNTFSEQITR
LGYERVPLVETEGQWSRRGDIVDVFPVSSELPVRLDWFGDEIEQLREFDPATQRSAALDK
IDQLILTPTSFAPIVMAAVQNSAEFQVLSTELNDDSELRTTENSELLEGSRRFLGLAFDK
PASLLDYLPENTLITVDEPEQCHAHSDRWVENAEEQWQLLASRTDEEISTLLPRVHCSFD
ECLADTAEFKKLNLSELVEENSGINLASRRLPITPHQFAKIAETLRQERDRKFSVWLLSA
QPSRSVSLLQEHDCPAQFIPNPRDYLAIDKQQLNHTPVALKYSGLAELEGFILPTFRLVV
VTDREFYGQHSLATPSYIRKRRKAASKQVDPNKLRPGDFVVHKNHGVGKFLKLESLTIND
ETREYLVVQYADGLLRVAADQVGVLSRLRTAADKPPELNKMTGKAWENTKNKVRKAIKKL
AVDLLKLYASRSQQKGTAYPQDTPWQQEMEDSFPYQPTTDQLKATQDVKRDMESDRPMDR
LVCGDVGFGKTEVAIRAIFKAVTSGGKQVALLAPTTILTQQHYHTLKERFAPYPINVGLL
NRFRSAEERREILKRLATGELDVVVGTHQLLGKGVTFRDLGLLVVDEEQRFGVNQKEKIK
SLKTLVDVLTLSATPIPRTLYMSLSGIREMSLIATPPPSRRPIQTHLSPTNPESIRSAIR
QELDRGGQVFYVVPRVEGIEEIAAELRQMIPGARIAIAHGQMEESDLESTMLTFSNGEAD
ILVCTTIIESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLS
DAARQRLRAIQEFAQLGSGYQLAVRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEEAI
REIRGQEIPKVDDTQIDLNLTAFVPADYITDLDQKMSAYRAVAAAKSKEELSQIAADWND
RYGAIPKPATQLLRVMELKQLAKKLGFSRIKPENKQHIVLETQMEEPGWKNLAENLPESL
RTRFVYSPGKVTVRGLGVMKADQQLQTLIDALGKMQGAVVEEAIA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttccattgtgcgtgctttagggcggtctccgctcaccactgaactcctc
tccaagctaaatcggcaacaagagttgttgttaagtggcattcctcgcttgccaaaaggc
ttagtagcttcggcattggctcaaactgagggaaagaatttgttcgtggtctgtgcgact
ttggaagaagccggacgctggacaacacaactcgaggcaatggggtggcaaacagtacat
ttctacccaacctctgaggcatccccatacgaaccatttgaccccgaaaccgagatgacc
tggggacagatgcaagtccttgcggatttggtgcaatttggcacagacagagataaaaaa
gatgagggagatcagcaagcaaaaccttcctcatccccctcacctaagatggcgattgtc
gccactgttgcagcgctacaacctcatctaccaccagcccaagcctttaaacctttctgc
atcactctcaggcgtggtatggaatttgacttaaataccttcagtgaacaaatcactaga
ctagggtacgaaagggtgcctttggtggaaacagaagggcagtggagtcggcgcggcgat
attgttgacgtgttcccagtttcctcagagttgcctgtacgattagattggtttggcgac
gaaattgagcagttacgggaatttgacccagcaacccaacgttccgctgcccttgacaaa
attgaccagcttattcttacccccacaagttttgctcccatcgttatggcagcagtgcaa
aacagtgctgagttccaagtcctaagcactgagttaaatgatgactcagaactgaggact
acagagaactcagaactgttggagggtagccgtcgctttttgggcttagcttttgataaa
cctgcttcgctattagattatttacctgaaaacaccctaattaccgttgatgaaccagaa
cagtgccacgcccacagcgatcgctgggtagaaaatgcagaagaacaatggcaactgctg
gcaagccggacggatgaggagatttccaccttattaccgagagtccattgctcatttgat
gaatgtttggctgatacggcagaatttaaaaaattaaatttatcggaactcgtcgaggaa
aacagcggcattaatctcgccagtcgcaggttgccgatcacgccgcaccaatttgccaaa
attgcagaaacactgcgacaagaacgcgatcgcaagttctcggtttggctgctttccgcc
cagccttcgcgttctgtctcgctactgcaagaacacgactgtcctgcccagtttattcct
aacccccgcgactacctagcgattgacaagcagcaacttaatcacacaccagttgctctg
aaatattctggtcttgcggaacttgaaggtttcattttacctacgttccggctggtcgta
gtgactgaccgggaattttatggtcagcactccctcgcgacacccagttacatccgtaag
cggagaaaagctgcttctaaacaagttgatcccaataagttgcgtccaggggatttcgtc
gttcacaaaaaccacggtgtaggtaaattcctcaagttggaaagtctcacaattaacgac
gaaacccgtgagtatttggtagtgcagtatgcggacggcttattgcgtgttgcagctgac
caagtgggtgttttgtcgcggttgcgcacggcagcggataaaccgccagaactcaacaaa
atgacgggtaaggcttgggaaaataccaagaacaaagtccgtaaggcaattaagaaattg
gcggtggacttactcaagctttatgcatcgcgatcgcaacaaaaaggcactgcctacccg
caggatacaccttggcagcaggagatggaagactccttcccttaccaaccgacaaccgat
cagcttaaagctacgcaagatgtcaaacgggatatggaaagcgatcgcccaatggatcgt
ctcgtttgtggggatgtcggttttgggaaaacagaagtggcaattcgcgccattttcaaa
gctgttacttctggcggaaaacaagtcgcgctgcttgcgccgacgactatcctgactcag
caacattaccacaccctcaaagaacgctttgctccctaccctatcaacgtggggttactc
aaccgcttccgcagcgccgaagaacgtcgcgagattctcaaaagattggcaacaggggag
ttagatgtggtcgtagggacacaccaacttttgggtaaaggcgtaaccttccgcgactta
ggacttttggtggtagatgaagaacagcggtttggggtcaatcagaaagagaaaatcaaa
agcctgaaaactctggttgatgtgctgactctttctgcaactccgattccccgtaccttg
tatatgtccttatcggggattcgggaaatgagtttgattgccacaccacccccatccaga
cgaccaattcaaactcatttatcaccaacaaatccggaaagcatacgcagtgcaattcgt
caagaactagaccgagggggacaggtattttacgtcgttccccgagtcgagggaattgag
gagatagcagcagagttgcggcaaatgataccaggggcaagaattgcgatcgcccacggt
caaatggaagaaagcgatttagaatcaacgatgcttaccttcagcaacggggaagcagat
atccttgtgtgtaccacgattattgaatctggtttggatatcccgcgagtgaatactatc
ttaattgaagatgctcatcgcttcggattatcccaactttaccagctgcggggtcgtgtt
ggtcgtgcgggaattcaagctcatgcatggttattttatcccaagcagcggacgctatcc
gatgccgcccgccagcggttacgggcgatacaagaattcgcacagttgggttctgggtat
cagcttgcagtgcgcgatatggaaatcaggggtgtaggtaacttgctgggtgcagaacag
tcggggcaaatggaagctataggttttgatttatacatggaaatgctcgaagaagctatc
cgtgaaatcagagggcaagaaattcccaaagttgatgatacacagattgacctcaacctt
acagcgtttgtcccagccgattacatcaccgatttggatcaaaagatgagtgcttaccgt
gcagttgcagctgcgaaatctaaagaagaattatcgcagattgctgctgactggaatgac
cgatatggtgcaattcctaaaccagcgactcaactattgcgagtgatggaactcaaacag
ctggcgaagaaactaggatttagccgcattaaaccagaaaacaagcagcacattgtttta
gaaacgcagatggaagaacctggttggaaaaacttagcagaaaatttgccggaaagcctc
agaacacgctttgtttactctcctggtaaagtgacagtgcgaggtttaggagttatgaaa
gcagatcaacaattgcaaacgttgatagatgctttgggtaagatgcagggtgcggttgtg
gaggaggcgatcgcctaa
DBGET
integrated database retrieval system
