Kalymmatonema gypsitolerans: NIES4073_71470
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Entry
NIES4073_71470 CDS
T10147
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
scys Kalymmatonema gypsitolerans
Pathway
scys03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
scys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES4073_71470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scys03400
]
NIES4073_71470
Enzymes [BR:
scys01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NIES4073_71470
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NIES4073_71470
DNA repair and recombination proteins [BR:
scys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NIES4073_71470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
BAZ26241
LinkDB
All DBs
Position
7928830..7929714
Genome browser
AA seq
294 aa
AA seq
DB search
MPELPEVETVRRGLNQLTLNQEITGGDVLLERTIAYPFSVDEFLTPIKGSAISTWHRRGK
YLLAELTSSPSSPSLPHSLTPSSPLNGGLGVHLRMTGQLLWLHQDEPLHKHTRVRLFFRD
ERELRFVDQRTFGQMWWVPPGVPPESIITGLGKLAVDPFSPEFTVEYLALKLQNRRRPIK
TALLDQSVVAGLGNIYADEALFLSGVLPETLCIDLQPEQIERLRASIIQVLEASIEAGGT
TFSNFLNVKGINGNYGGVAWVYNRAGEPCRVCGTAIARTRLAGRSSHYCVHCQR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcctgaagttgaaacagtccggcggggtttgaatcaattaacccttaac
caggaaattacgggtggagatgtgctgcttgaacgcaccatcgcctacccgttttctgtt
gatgagttcttaactccaatcaaaggaagtgccatctcaacttggcatcgtcgcggcaaa
tatctcctagctgaactcacctcatccccctcatccccctcactccctcactccctcact
ccctcatctccccttaacggcgggctgggggttcatctgcgaatgaccggtcaacttttg
tggctgcatcaagatgaaccgttacacaagcacacgcgagtcaggttattttttagagat
gaacgcgaattacgctttgttgaccaacgtacctttggtcaaatgtggtgggtacctcca
ggagtgccaccagaaagcattatcacaggtttgggaaaactagcagtagatcccttttca
ccggaatttactgttgagtacttggcgcttaaactgcaaaaccgtcggcgtccgataaag
acggcacttttagatcagtcagtcgtggcaggcttaggtaatatctatgctgatgaagcg
ctgtttctcagtggagtcctgccagaaactttatgtatagatttgcagccagagcaaatt
gagcgtttgcgagccagcattattcaagtgttagaagccagtatagaggctggtggcaca
acttttagtaatttcctgaatgtcaagggcatcaacggtaactacggtggtgttgcctgg
gtttacaaccgtgctggagaaccctgtcgagtttgtggtacggcaattgcacggactcgg
ttagctgggcgttcaagtcactattgtgttcactgccaacgataa
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