Kalymmatonema gypsitolerans: NIES4073_79920
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Entry
NIES4073_79920 CDS
T10147
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
scys Kalymmatonema gypsitolerans
Pathway
scys03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES4073_79920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scys03400
]
NIES4073_79920
DNA repair and recombination proteins [BR:
scys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES4073_79920
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES4073_79920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_30
AAA_22
HEM4
AAA_16
HerA_C
Motif
Other DBs
NCBI-ProteinID:
BAZ27076
LinkDB
All DBs
Position
8880845..8882842
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AA seq
665 aa
AA seq
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MTEFGLQAPFQPTGDQPQAIAQLVTSISAGNRYQTLLGATGTGKTFSIASVIEKIGKPTL
VLAHNKTLAAQLCNELREFFPDNAVEYFVSYYDYYQPEAYIPVTDTYIEKTASINDEIDM
LRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAIPFQVGLEVNQREILKELVSVQY
SRNDVELGRGRFRVRGDVLEIGPAYEDRIIRVEFFGDEIDAIRYVDPVTGEIIKSVEALN
IYPARHFVTPEERLEAACDDIAAELKERKAQLEEAGKLLEAQRIDQRTRYDLEMLREVGY
CNGVENYSRHLAGRIAGEPPECLIDYFPKDWLLVIDESHVSVPQIRGMYNGDQARKKVLI
EHGFRLPSAADNRPLKAEEFWTKVNQCIFVSATPGDWELEVSEGHVAEQIIRPTGVIDPE
IIVRPTEGQIDDLLREIKDRVDRKERVLITTLTKRMAEDLTDYLQDNGIRVRYLHSEINS
IERIEILQDLRDGKFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRA
ARHVRGQAIMYADNLTHSMIRAMEETERRRNIQEAYNRMHGITPQPILRRSRNAILSFLE
VSRRLNATELETVEQHIDEFPLEEIPGFITQLEAQMKEAAKKLEFEEAAKLRDRIKLLRD
KLVGR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacagaatttggtcttcaagctccctttcaaccaacaggcgatcagccacaagcgatc
gctcaacttgtcactagtataagcgctggcaatcggtatcaaactttacttggagcgacg
ggaacaggtaagacattttccatagcatcagtgattgaaaaaatagggaaacccactctc
gtccttgctcataacaaaactctcgccgcacaactttgtaatgaattgcgagaattcttt
cctgataacgcagttgagtatttcgtcagctactacgattactatcagccggaagcatat
attcctgtcaccgatacatatatagaaaaaacggcttcgattaacgatgaaattgatatg
ttgcgacactcggcgacgcgatcgctgtttgaacgccgcgatgttatcgttgttgcatct
atcagttgtatctacggtttaggtattccctcagagtaccttaaagccgctattcccttt
caagtcgggctggaagtcaaccaacgggaaatactgaaagaattggtatcagttcagtat
agccgcaatgatgtagaattgggtcgcggacgttttcgtgtccggggtgatgtgttagaa
attggtccagcgtatgaagaccgaatcattcgcgtggagttttttggtgatgaaattgac
gctattcgttacgttgaccccgtgacaggtgaaattatcaagagtgtagaagctttgaat
atttaccctgcgcgtcacttcgtcactcctgaagaaaggttagaagcagcgtgtgatgat
atcgcagcagaactcaaagagcgcaaagcacaattagaggaagcagggaaattactggaa
gcgcaacgtatagaccagcggacgcgctatgacttggaaatgttgcgcgaggtgggttat
tgcaacggtgtggaaaactattcccggcatttagcaggacgcattgcaggcgaaccacca
gagtgtttgattgattattttcccaaagattggctcttggtgatagacgaatctcacgtt
agtgtaccgcagatacgcgggatgtataatggcgaccaagcacgcaaaaaagtgttaatt
gagcatggatttcgtcttcccagtgcggctgataaccgtccactcaaggcggaggaattt
tggacaaaggtaaatcagtgtatttttgtttccgccaccccaggagattgggaactcgaa
gtttcagaaggtcatgtggcggaacaaatcattagaccaactggagtgattgacccagaa
atcattgtgcgtcctacagaagggcaaattgatgatttgttgcgcgaaatcaaagacaga
gttgaccgcaaagagcgtgtgctgattacaacactgactaagcgcatggcagaagatttg
actgactatctgcaagacaacggtattcgggtgaggtatctgcattcggaaatcaattcg
attgagcgaattgagattttgcaggatttacgcgatggcaaatttgatgtgttagttggt
gtaaacttgctgcgggaagggttagatttaccggaggtttctctggtggcgattttagat
gcagataaagaaggctttttgcgtgcagaacgttctctgattcaaacgattgggagagca
gcgcgtcatgtgcgaggacaagcaattatgtatgctgataacctgacccatagcatgatt
agagctatggaagaaaccgagaggcgtcgcaatattcaggaggcttacaaccggatgcac
ggaattacaccacaaccgattctgagaagatcgcgtaatgcaattttgtctttcttagaa
gtatcgcggcgattaaatgcaactgagttagaaacagttgagcaacacatcgatgaattt
cctttagaagagattccagggtttattacccaactggaagcacagatgaaagaagcagcc
aaaaaactagagtttgaggaggcggcaaagttgcgcgatcgcataaagcttctgcgggat
aaattggtgggacgctaa
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