Scytonema sp. HK-05: SAMD_01540
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Entry
SAMD_01540 CDS
T09974
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scyt03016
]
SAMD_01540
Enzymes [BR:
scyt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SAMD_01540
Transfer RNA biogenesis [BR:
scyt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SAMD_01540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
BAY42576
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All DBs
Position
168107..170167
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AA seq
686 aa
AA seq
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MEKGTLVEFRVGSDRRLGVVDRPDGKARMFVVDERGQAHSLAPRQISYAVTGEAYKPSQI
PEFLEEVKPYLDPSSLEVAWELLVEGGETVTPAEMANLLFSESEAPHRYAAYYLLSDDKI
YFKQKGEAYEPRSASQVAERKHQLEIEALKAKGQQEFLARVEQALRGEPVEWQRHDRHRL
EALEKYAALLADIIRVGLNYDSLARAYPPPALVLETMNMLGRPATPQGSFQLLVDLGWWS
PHENLFVRRSSIPVQFASKVLEVAQQRLESHPPDQDVNRLDLTHLKVYTIDDESTTEIDD
GLSWELLPDGTERLWVHIADPTRWLMPEDELDLDARKRGSTVYLPTGMVPMFPEVLATGP
MSLVQGKVCCALSFGIVLDDTGAVEDYSIHPSFIKPTYRLTYEDVDEMLDLGVQAESEIA
AIANWARRRKSWRYAQGAISINMPEAMIKVKGDDISIEILEDSTARQLVAEMMIVAGEVA
ARYGQKHNIPLPFRGQPQPELPPEQELLQLPAGFVRACAMRRCMPKSEMSITPVRHAGLG
LETYTQATSPIRRYSDLLTHFQLKAHLRGENLPFSAEQLKEVMMTVSSITQEVTMVERQT
NRYWALEYLRRHPEEIWEATVLMWLREDSGLALILLEDLGLQLPMLFKRSVKLGEQLLVK
VFHADPHKDVIQFQEIIYQEAQPAAN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttcgagttggtagcgatcgccgtttgggtgtagta
gaccgtccagacggcaaagcgcgtatgtttgtggtagatgaacggggtcaagcccacagt
ctcgcacctcggcaaatcagctacgcagtgaccggggaagcctacaagccttcgcagatc
ccggagtttctggaggaggtaaagccttatttagatccctccagtttagaggtggcttgg
gaattactggtagaaggcggggaaacagtgacgccagccgaaatggcaaatctcctgttt
tcagaatcagaagcacctcatcgctacgcagcgtattacttgttatcagacgataaaatt
tactttaagcagaagggagaggcttacgagccacggagtgcatctcaagtagcggaacgc
aaacaccagcttgagatagaggcgctaaaagctaagggacagcaagaatttctcgctaga
gtagaacaagcgctcaggggtgaaccagtagagtggcaacgccacgaccgccaccgcttg
gaagccctggaaaaatatgcggcgctacttgctgatattatacgtgtggggttaaactat
gactctctcgctcgcgcctatcctcccccagcgttagtcttggaaacgatgaatatgctg
ggacgccccgcaaccccccaaggatcctttcaattgttagtagacttggggtggtggagt
ccgcatgagaacttatttgtgcgtcgttcgtcaattcccgtacaatttgctagcaaggta
ttagaagtggcgcaacagcgattggaatcacatccgcccgatcaagatgtcaaccgcttg
gatctgacccatctgaaggtgtatacaatcgatgatgaaagtactaccgagatagatgat
ggtctaagttgggaattacttcccgatggcacagagcggttgtgggtgcatattgctgat
cctacgcgttggttgatgccagaagatgagttagatttagacgcgagaaagcgaggcagt
acagtttatttgcccacaggcatggttcctatgttccctgaggttctagcaacaggacca
atgagtctggtgcagggaaaggtatgttgtgccctgagttttgggattgttttagatgac
actggggcagtagaagattatagcattcatccaagttttattaaaccgacttatcgccta
acctacgaagatgtcgatgaaatgttggatttgggcgtacaggcggaatcagaaattgcg
gcgatcgccaattgggcacgaagacggaaaagttggcggtatgcccaaggagcaatcagt
atcaacatgccggaggcaatgatcaaagtcaaaggcgatgatattagtattgaaatctta
gaagactccacagcacggcaattggtagccgaaatgatgattgttgccggtgaagttgct
gctcgttatggtcaaaagcataacattccgttaccctttcgcggtcagccacagccggaa
ttacctcctgagcaggaattattacagctgccagcaggattcgtccgcgcctgtgctatg
cggcgttgtatgcccaagagcgaaatgagcattacccccgtgcgtcatgctggtttaggt
ttagagacttacacccaagccacttcccccatccgtcgctatagtgatttgctcactcac
tttcaacttaaagctcacctgcgcggtgaaaatctgcccttttccgcagaacaattgaaa
gaagtcatgatgaccgtctcttcaatcacccaagaggtgacgatggtagaacggcaaacg
aatagatattgggctttagagtatctgcgccgtcatcctgaggaaatttgggaagcaaca
gtgctgatgtggttgagagaagacagtggcttggctctgattttgctagaagatttgggc
ttgcagttgccaatgttatttaaacgttctgtgaagttgggcgaacagctgttagttaaa
gtctttcacgccgatccacataaagatgtgattcagtttcaggaaatcatttatcaagaa
gcgcaacctgcagcgaattaa
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