Scytonema sp. HK-05: SAMD_07300
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Entry
SAMD_07300 CDS
T09974
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMD_07300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyt03019
]
SAMD_07300
03009 Ribosome biogenesis [BR:
scyt03009
]
SAMD_07300
Enzymes [BR:
scyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMD_07300
Messenger RNA biogenesis [BR:
scyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMD_07300
Ribosome biogenesis [BR:
scyt03009
]
Prokaryotic type
rRNA helicases
SAMD_07300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAY43151
LinkDB
All DBs
Position
884156..885700
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AA seq
514 aa
AA seq
DB search
MNLSFLDLGISQERVEQLEKLGFTAPTNIQAQAIPHLLGGRDVVGQSQTGTGKTAAFSLP
IIERLDLTQKAVQAVVLTPTRELAIQVHDAISTFMGTQGLRVLAIYGGQSIERQMLQLKR
GVHMVVGTPGRVIDLLERGSLKLDRVKWFVLDEADEMLSMGFIDDVDKILSQAPQERQTA
LFSATMPPSIRQLVNKFLHSPVTVTVEQPKAAPNKINQVAYLVPRHWTKAKALQPILEME
DPESALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQLFERH
NRQSWQVLSIPSRTQIEARHIEKLQVQVREALAGERLASFLPMVSELIEQYDAQAIAAAA
LQIAYDQTRPAWLQSELDIPEEEIVQPSAKPRLRSNNRRGEFSGERSRSAWVPSDGSTTE
GDKHSSKPKLRTGRRENSMSPKKLGSTTARETAS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttctagatttaggaatttcacaagagcgtgttgagcaattagaaaaa
ttaggctttaccgcaccaactaacattcaagcacaagcaattccccacctattgggtggt
cgcgatgtcgtaggtcaatcgcaaacaggaacaggaaaaacagcggcattttccctaccg
atcatagagcggctcgatctgactcaaaaagcagtccaagctgtggttctgacaccgact
cgtgagttagccatccaagttcacgatgctataagcaccttcatgggaacccaaggattg
cgggttttagcaatctacggtggtcaatcgattgagcgccaaatgttacaactcaaacgc
ggcgttcacatggttgtaggtacgccagggcgagtcatagacttgctagagcggggtagt
ttgaagctggatcgcgtgaagtggtttgtgttagatgaagccgatgaaatgttgagcatg
ggctttatcgacgatgtagacaaaattctctcacaagcacctcaagagcgccagacagcg
ttgttctcggcaactatgccaccttcaattcgccaattggtgaataagttcttgcactcg
ccagtgacagtgactgttgagcagccaaaagccgctcctaacaaaattaatcaagtcgct
tatcttgtaccgcgtcactggacgaaagccaaagctttacagcccatcttggaaatggaa
gatccagaatcggctttaatctttgtccgcaccagacgtacagcagcagaactaacaaat
caactgcaagcggcaggtcatagtgttgatgaataccacggtgatttgtcacaacaagca
cgggaacggttactgacacggttccgcaatcgtcaagtacgctgggtggtcgcaaccgat
attgcggcacgaggtttggacgttgaccagttgtctcacgtcatcaacttcgacttaccc
gatagcgtagaaacctacgtccaccggattggtcgtactggtcgagctggtaaggaaggc
acagcaatttctttagtacagccgtttgagcgacgcaagcagcaactgtttgaacgccat
aaccgccaaagttggcaagtcctgtcgattccttcacggacacaaattgaggcacggcac
atagaaaaattgcaagttcaggtgcgcgaagctttggctggcgagcgtttggcttcattt
ttaccgatggtgagcgaactgattgaacaatacgatgctcaggcgatcgctgcggcagcg
ttgcaaatcgcttacgaccaaacccgtcctgcttggctgcaatcagaacttgatattcca
gaagaagagatcgtgcagccatctgccaaacccaggctgcgttccaacaaccgtcgcggt
gagttttctggtgagcgcagtcgctccgcttgggtaccatcagacggcagcaccacagaa
ggagacaaacacagttccaagcccaaactgcggacaggacgtcgcgagaattccatgtct
ccgaaaaagctaggttctactacagctagagaaacagcttcatag
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