Scytonema sp. HK-05: SAMD_07970
Help
Entry
SAMD_07970 CDS
T09974
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyt03032
]
SAMD_07970
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_07970
Enzymes [BR:
scyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SAMD_07970
DNA replication proteins [BR:
scyt03032
]
Prokaryotic type
DNA Topoisomerases
SAMD_07970
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SAMD_07970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
DUF6429
DUF771
SSP160
Motif
Other DBs
NCBI-ProteinID:
BAY43218
LinkDB
All DBs
Position
955882..958539
Genome browser
AA seq
885 aa
AA seq
DB search
MSTLVIVESPTKARTIRNYLPQGFRVEASMGHVRDLPQSASEIPATVKGEKWAQLGVNVE
ADFEPLYVVPKDKKKVVTQLKDALKEADELILATDEDREGESISWHLHQLLKPKVPTKRM
VFHEITSDAIKKALKNCRNIDEQLVRAQETRRILDRLVGYTLSPLLWKKIAWGLSAGRVQ
SVAVRLLVTRERQRRAFRQGSYWDLKATLTPPDSPKQSFASQLVTLGGTRIANGGDFDAA
TGQIASDRNVVLLNQEQAQALKERLTGKTWKVSDLEERPVTRKPAPPFTTSTLQQESNRK
LRLSARDTMRIAQNLYEQGYITYMRTDSVHLSDQAITAARDCVEKLYGKNYLSPQPRQYT
TKSKGAQEAHEAIRPAGSTFRTPQETGLGGRELQLYDLIWKRTVASQMADSRQTQITMQL
QVEDAGFRSSGKRIDFPGYLRAYVEGSDDPEAALEDQEVILPNLKVGDSPNCSNLEAVGH
ETQPPARYTEATLVKTLESEGIGRPSTYASIIGTIIDKGYAQLTNNALVPTFTAFAVTEL
LEKHFPDIVDPSFTSKMEQTLDDISTGEAKWLPYLKEFYLGDKGLETLVKEQENQIDANV
ARTVELENLDVKVRIGKYGAYLEKENGDGVVTASIPKDLTPADLDPQKVETLLRQKTEGP
EQLGRHPETGEPIYVLIGPYGPYVQLGDKTEENPKPKQASLPKGVTPENVTLEQAVGLLS
LPRKLGAHPATGAEIQANLGRFGPYVVHNQSGEKDYRSLKASDDVLTISLERALELLSEP
KKGRSTSSKSKAAVRELGPHPEDGEPVNIYNGPYGPYIKHGKTNAKMPEGVSVEDMTLAS
ALESLASKASTAKSTRKTTSKSTSKSTSSNSKSTTKSSSTTAKKK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactctcgtcatcgtcgaatctccgaccaaagctcgtaccattcgcaactacctg
ccacaaggctttcgggtggaagcgtcaatgggtcatgtgcgtgaccttccccagtctgct
agtgaaattcccgcgactgtcaagggagagaaatgggcgcagctgggggtaaatgtagag
gccgactttgaaccgctatatgtcgtccctaaagataaaaagaaagttgtcactcagctt
aaagacgcccttaaagaagcagatgaactgatcctggcaacggacgaagaccgggaaggt
gaaagcatcagttggcatttacaccagttgctcaagccaaaagttccaacaaagcggatg
gtgtttcacgaaattacctctgacgccatcaaaaaagctttgaaaaactgccgcaacatc
gatgaacagttagttcgtgcccaagaaacgcggcggattttggatagacttgtgggctat
accctgtctcctttgctgtggaaaaaaatcgcctggggattatctgctgggcgcgtgcag
tcggttgcggtgcggctgttagtcacccgggaacgccaacgtcgtgctttccgccaaggt
tcatactgggatttgaaagcaacgttgaccccccctgattctcctaagcagtcatttgct
tcccaactggtcacactgggaggcacaaggatagcaaatggtggtgattttgacgccgcc
acagggcaaattgccagcgatcgcaatgtcgtcctgctcaatcaggagcaagcccaagcc
cttaaggaacgcctaaccgggaaaacctggaaagtcagcgacctagaggaacgccctgtc
acacgcaaacccgcaccaccgtttaccacctcgaccttgcaacaggaatctaaccgtaaa
ctgcgcctttcggcacgggacacgatgcgaattgcccagaatttgtacgaacaagggtac
attacctatatgcgtacagattcggtgcatttgtcggatcaggcgatcactgccgcccgt
gactgtgtagaaaaactttacgggaaaaattaccttagcccccaaccaaggcaatacacc
accaaatccaaaggcgcacaagaagcacacgaggcaattcgcccagccggtagcaccttc
cgcactccccaagaaactggtttaggcggtcgggaactacaactgtacgacctgatttgg
aagcgtaccgtcgccagccaaatggcagactctcgccaaactcaaatcaccatgcagttg
caagtggaagatgctggttttcgctcttctggcaaacgcattgactttccagggtactta
cgcgcctatgtggaaggttccgacgacccagaagcggcgctggaagaccaggaagtcatc
ttgcctaacttaaaagtgggcgatagtcccaactgttccaatctagaagcagttggtcac
gaaacccaacccccggcaagatacaccgaagccaccctggtgaaaaccttagaaagcgaa
ggcatcggacgtcctagcacctacgccagcatcatcggcacaattattgacaagggttac
gcccaattgacgaataacgcccttgtgcccaccttcaccgcctttgcggtcacggaactg
ttggaaaaacacttccccgacattgttgatcccagctttacctccaaaatggagcaaacc
ttggatgacatttccacaggtgaagctaagtggctaccctacctaaaggaattctatttg
ggagacaaaggtctagaaaccctagtcaaggaacaggaaaaccaaattgatgccaatgtt
gcccggacagtggaactggaaaatctagatgtcaaagtccgtattggtaaatatggtgct
tatttggaaaaagagaatggtgacggtgttgtcaccgcctcgattcccaaagacctgact
cctgctgacctcgatccccaaaaggtagaaacgctgctgcggcaaaaaaccgaaggtccg
gaacagctcggtcgtcatcccgaaactggcgaaccgatttatgtgcttattggtccttac
ggtccttatgtccagttgggtgacaaaaccgaggaaaaccctaaacccaaacaagcttcc
ttacctaaaggtgtaacgccagaaaacgtcacccttgagcaagctgttggtcttttgtca
ctaccccgaaaactaggagctcatccagcaacaggtgctgaaatccaagcgaatttggga
cgctttggaccttacgtggttcataaccaaagtggtgaaaaagactaccgttctctgaaa
gcgagtgatgatgtattgacaatttccttagaacgtgctttggaattgttatctgaaccg
aaaaagggacgcagtaccagcagcaagtctaaagcggctgtgcgggaattgggtcctcac
cccgaagacggcgaaccagtcaatatttacaatggtccctacggaccttacattaagcac
ggcaaaacgaatgccaaaatgccagaaggagtatctgtggaagatatgacccttgcttca
gcgctagagtcgctggcatccaaagcatcaacagcaaaatctactcgcaaaacaacgagt
aaatcaacgagtaaatcaacgagttctaactctaaatcaacgaccaagtcgtcaagcacc
actgccaaaaaaaaatga
DBGET
integrated database retrieval system
