Scytonema sp. HK-05: SAMD_10770
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Entry
SAMD_10770 CDS
T09974
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03420
Nucleotide excision repair
scyt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMD_10770
03430 Mismatch repair
SAMD_10770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_10770
Enzymes [BR:
scyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMD_10770
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMD_10770
MMR (mismatch excision repair)
Other MMR factors
SAMD_10770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAY43497
LinkDB
All DBs
Position
complement(1248107..1250569)
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AA seq
820 aa
AA seq
DB search
MPQESQSIEVSSLSVSSLRETGIASIRDSLRLGQQHMANWDCGSLAVSAVPGAGKSTGMA
AAAAIAIARQYDQSSALRRNSRRQLIVVTFTRSAVANIKVKIREYLKKLSLPQTGFTVHT
LHGLALNIANRYPDLSGLQLENVTLITPNQSHRFIRTAVEQWINTHPGRYSRLLEGIQFD
GEETERLRRQSVLRTEVLPELATTVIHEAKSSGLFPQDLREFSKQITDEYEILSIAAGLY
EQYQSLMRSRDFIDYDDMILAALRVLENENARRIEQNQVFAVFEDEAQDSSPLQTRLLTI
LATDAHNPNQPPNMIRVGDPNQAINSTFTPADPIYFRQFCKECDAQGRLVTMDQAGRSTK
IIIDAANFALEWVNSLYVKTGQQGQAGQGRISTSSPSSPSSSSSSSSPPSPHLPISPSPF
RFQRIRPVEFNHRQNDVNPQAVGRGLELYTPRDIHHTVELLSERVVELFSQDADKISAAI
LVRENRQGRWLAEALTSVCKKHEIPIYDVGERDRHSHVPEEILAVLQFCDRPHSPDYLKG
TLQVLVHRRLIETQDLNALATLPEEFLYPGPLAAPQPQPVQKAARLCRSLLRARLELPLY
QLISFIALTLNYEQAELATADKLAERVNQQIAGNTSMGAMLNVLSEIVSSERFEPVETED
LEARYTRSGQLTIITMHKAKGLDWDYVFIPFLHENLIPGRFWVPPQSQFLGDFTLSEVAR
AQIRAALHAKSTLPSVTAAWEQAKHLKTAEEYRLLYVAMTRAKRLLWMSAASKAPFTWSK
PENLQEQTPCPVFPALKRQFPQCIVTMATNLGGDTKKSGT
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
gtgcctcaagaatctcaatcgatagaagtatcttcattgtctgtgtcttcactgcgagag
acaggcatagcaagtatccgtgatagcctgcgtctcggacagcagcatatggctaactgg
gactgtggatcactggctgtttcagcggttcccggtgctggcaaatctacaggaatggca
gcagcagcggcaattgcgatcgcccgtcagtatgatcaatcttctgcattacgtcgcaat
agccgtcgtcaactgattgttgttacctttactcgctcagctgttgccaatattaaagtt
aaaatccgcgaatacttaaaaaaattatctttacctcagactggctttactgtacacacg
ctacatggtcttgccttaaatatagccaaccgctatccggatttatcaggtttacagtta
gaaaatgttacattaattacccccaaccaaagtcaccgattcatccggactgctgtagaa
caatggattaacacccatccagggcgttattctcggttattagaaggtattcaatttgac
ggagaagaaacagaaagactgcggcgtcagtcggtgttacgtacagaagtcttgccagaa
ctggcgactacagtcattcatgaggcaaaaagttctggtctattcccccaagatttgcgt
gaattcagcaagcaaatcacagacgaatatgaaattttaagcatcgcggctgggttgtac
gagcaatatcaaagtttaatgcgatcgcgtgactttatcgactacgatgacatgatttta
gccgccctgcgcgttttggagaacgaaaacgcccggagaatcgagcaaaatcaagttttc
gccgtctttgaagacgaagcacaagattctagcccactgcaaacgcgactcttaacaatt
ctcgccactgacgcccacaaccccaaccaaccgccaaatatgattcgcgttggtgatccc
aaccaagcgattaactccaccttcaccccagccgatccaatttattttcggcaattctgc
aaagagtgtgacgcccaagggcgactggtgacaatggatcaagctggtcgcagtaccaaa
attattatcgacgccgccaactttgccttggaatgggtgaatagcctttatgtgaaaaca
ggacaacaaggacaagcaggacaagggagaatttctacctcatctccctcatccccctca
tcttcctcatcttcctcatcccccccatctcctcacctccccatctccccatcaccattt
cgttttcaaagaattcgccctgttgaattcaatcaccgtcaaaatgatgtcaatccgcaa
gctgtgggacggggactggaactgtacacgcctcgtgatattcatcacacagtcgagtta
ttgtccgagagggttgtagagttattttctcaggacgcggacaaaattagtgcagctatt
ttggtgcgggagaaccgtcaaggacggtggttagcagaggcgttgacctcagtgtgtaaa
aagcatgaaattccaatttatgatgttggggaacgcgatcgccattctcatgtcccggaa
gagattttggcagttttgcaattttgcgatcgccctcattctcccgactacctcaaaggg
acattacaagtccttgtacatcggcgattgattgaaacgcaagacctcaacgcccttgca
actttgcccgaagaatttttgtatccaggtcctttggctgcacctcagccacagcccgtg
caaaaagctgctcgcctgtgtcggagtttacttcgcgctcgtttagaactgcccctgtac
cagttaatttcattcatcgccctaacacttaattacgagcaagcagaactagcaacagcc
gacaaattagcagaacgggtgaatcagcaaatagctggcaatacttcgatgggggcgatg
ctgaatgtattaagtgaaatcgtcagttccgaacggtttgaacctgtggaaacagaagac
ttagaagcacgatacacccgttccggtcaactcacaattatcaccatgcataaagcaaaa
gggctggattgggactacgttttcataccctttctgcatgaaaacttaattcctggcaga
ttttgggttcctccccaaagccagtttttaggtgactttactttatcagaagttgcccgc
gcccaaattcgtgctgctctccacgcgaaatctaccttacctagtgtcaccgcagcttgg
gaacaggcaaaacacctaaaaacagcagaagagtatcgcttactctacgttgccatgaca
agggcaaagcgcctgttatggatgtctgcggcttctaaagctccatttacctggagtaaa
ccagagaatttacaagagcaaaccccttgtccggtatttcctgcactcaaacgccagttt
ccccaatgcatagtcacaatggcaacaaatctcggaggagacacaaagaaaagcggcaca
taa
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