Scytonema sp. HK-05: SAMD_10980
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Entry
SAMD_10980 CDS
T09974
Symbol
sigF
Name
(GenBank) group 2 sigma 70-type sigma factor F
KO
K03086
RNA polymerase primary sigma factor
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SAMD_10980 (sigF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyt03021
]
SAMD_10980 (sigF)
Transcription machinery [BR:
scyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMD_10980 (sigF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BAY43518
LinkDB
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Position
1283501..1284670
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AA seq
389 aa
AA seq
DB search
MYQTEQQSLKETMNIADLGTMETMGSAADNEELFITLDAVADEEAPIVVENLEAEDRAGD
QMAAARPSGYNKTEYDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEIRELQASLSEQ
LGDQANKATVASHLGMTEKQLEHRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDL
IQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLK
KAQRELKQRLGRNPTEEEMAEALDVPAPQLRQLQQLRRQALSLNHRVGKEEDTELMDLLE
DEDNLSPEAKMNESMMRQEIWEVLGDVLTPREKDVISLRYGLITSEPCTLEEVGTMFNLS
RERVRQIQSKAMRKLRRPHIAKRLKGWLV
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaaacagagcaacaatccctgaaggaaactatgaatattgctgacttgggaaca
atggaaacaatgggaagtgctgctgataatgaagaattatttatcacgttagatgcagtg
gcagatgaagaagccccaattgttgtagaaaatttggaagccgaagatcgcgcaggagat
caaatggcggcggctcgtccctcgggatataacaaaaccgagtatgatgatgccgtcggc
gctttttttaaagaaatggctcgatacccgttgctaaagccagatgaagaggtggaatta
gcgcgcagagtccggtttttagaggaaattagagaattacaagcttccttgtctgaacaa
ttaggagatcaagcgaataaggcaactgtcgcttcccatttggggatgacagaaaaacaa
ctagaacatcgcttgtatcaagggcgagtcgcaaaacgtaaaatgattcgctctaaccta
cggttggtagtatctattgctaaacgatatttaaatcgcggagttccttttctagattta
attcaagaaggagcgatggggttaaatcgtgctacggaaaaatttgacccagataaagga
tataaattttctacctatgcctattggtggattagacaagcaattacacgggctatagcc
aacgatgcgcggacaattcgcttgcccattcatattgttgaaaaacttaacaagcttaaa
aaagcgcaacgcgaactcaaacagagactagggcgcaatcctaccgaagaagaaatggcg
gaagctttggatgttcccgcgccacaactacgccagttgcaacaactacgacgacaagca
ctttccctcaaccaccgtgttggtaaagaagaagacacggaattaatggatttgctagaa
gatgaagataacctctctccagaggcgaaaatgaacgaaagcatgatgcgccaggagatt
tgggaagtcttaggtgacgtactcactccacgggaaaaagacgtcatctctctgcggtac
ggtttaattaccagcgaaccctgtaccttggaagaagttggcactatgttcaatctttcc
cgcgagcgagttcgccaaattcaaagcaaagctatgcggaagttgcggcgtcctcacatc
gccaaacgcttaaaggggtggctagtatag
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