Scytonema sp. HK-05: SAMD_12380
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Entry
SAMD_12380 CDS
T09974
Symbol
groEL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMD_12380 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyt03019
]
SAMD_12380 (groEL)
03110 Chaperones and folding catalysts [BR:
scyt03110
]
SAMD_12380 (groEL)
03029 Mitochondrial biogenesis [BR:
scyt03029
]
SAMD_12380 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scyt04147
]
SAMD_12380 (groEL)
Enzymes [BR:
scyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SAMD_12380 (groEL)
Messenger RNA biogenesis [BR:
scyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SAMD_12380 (groEL)
Chaperones and folding catalysts [BR:
scyt03110
]
Heat shock proteins
HSP60 / Chaperonin
SAMD_12380 (groEL)
Mitochondrial biogenesis [BR:
scyt03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SAMD_12380 (groEL)
Exosome [BR:
scyt04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SAMD_12380 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
SAMD_12380 (groEL)
Exosomal proteins of breast cancer cells
SAMD_12380 (groEL)
Exosomal proteins of colorectal cancer cells
SAMD_12380 (groEL)
Exosomal proteins of bladder cancer cells
SAMD_12380 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
BAY43658
LinkDB
All DBs
Position
complement(1434205..1435845)
Genome browser
AA seq
546 aa
AA seq
DB search
MAKRIIYNENARRALEKGMDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIE
LEDHVENTGVALIRQAASKTNDAAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGID
KGTNFLVEKIKEHARPVEDSKAIAQVGSISAGNDEEVGQMIAEAMDKVGKEGVISLEEGK
SMTTELEITEGMRFDKGYISPYFATDPERMEAVFDEPFILLTDKKIALVQDLVPVLEQVA
RAGRPLVIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKALLEDIGILTGGQVI
TEDAGLKLESTKLDALGKARRITITKDNTTIVAEGNEAAVKARVEQIRRQIDETESSYDK
EKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHL
APGLEEWANSNLKGEELTGALIVSRALAAPLKRIAENAGQNGAVIAERVKEKEFNIGYDA
AKNEFVDLFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDNAPAGAGAGMG
GGDFDY
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcgcattatctacaacgaaaacgcacgtcgtgccctagagaaaggcatggat
attctggctgaggctgttgctgtgaccctcggtcccaaaggtcggaacgtagtgctagag
aaaaagtttggcgcaccacaaatcgttaatgacggtgtgaccattgctaaagaaattgaa
ttggaagaccacgtcgaaaacactggcgttgctctgatccgtcaagcggcttccaaaacc
aacgatgctgcaggtgatggcaccacaactgcgaccgttttggctcatgcaatcgtaaaa
gaaggcttgcggaacgttgcagcaggtgcgaatgccattttgctaaagcgtggtattgat
aagggtaccaacttcttagtagaaaaaatcaaagaacacgctcgtcctgtagaagattcc
aaagcgatcgcacaagttggttcaatctctgctggtaacgacgaagaagtcggtcagatg
attgccgaagcaatggataaggtgggcaaagaaggcgtgatttccttggaagaagggaag
tccatgaccaccgaattggaaatcaccgaagggatgcgctttgacaaaggctacatctct
ccctattttgcaactgatcccgagcggatggaagcagttttcgatgaacctttcatcctg
ctgaccgataagaaaatcgctctggtacaagacctcgtacccgtccttgagcaagttgca
cgtgctggtcgtcctttggtgattatcgccgaagatatcgagaaagaagctttggcaacc
ctggtcgtcaaccgcctacgcggtgtgctgaacgtggctgctgtcaaggctcctggtttt
ggcgatcgccgcaaagcattgctggaagacatcggtatcctcactggtggtcaagtgatc
accgaagatgctggtttgaagctggaaagcaccaagctggatgcgctaggtaaggctcgc
cgcatcacgatcaccaaagataacaccaccattgttgccgaaggtaacgaagctgctgtt
aaggctcgtgttgagcaaattcgtcgtcaaatcgatgaaaccgaatcttcctacgacaaa
gagaagctgcaagagcgtctggctaagctagctggtggtgtggctgtcgttaaggtaggc
gcggcgaccgaaacggaaatgaaggacaagaagctgcgcttggaagacgccatcaacgca
accaaggctgctgtggaagaaggtatcgttcctggcggtggtacaactctggctcacctc
gctcctgggctagaagagtgggcaaatagcaatctcaaaggtgaagagttgactggtgcg
ttgattgtctctcgcgccttggctgctcctctcaagagaattgctgaaaacgctggtcag
aatggcgctgtcattgctgagcgcgtgaaggaaaaagaattcaacattggctacgatgct
gccaagaacgagttcgttgatctctttgaggctggtattgttgacccagctaaagtgaca
cgttctgctctgcaaaacgctgcatctatcgctggtatggtcttgaccaccgagtgtatc
gtggttgacaagcctgagccaaaggataacgctcctgctggtgctggcgctggtatgggc
ggcggcgacttcgattactaa
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