Scytonema sp. HK-05: SAMD_13090
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Entry
SAMD_13090 CDS
T09974
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMD_13090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyt03019
]
SAMD_13090
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_13090
Enzymes [BR:
scyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMD_13090
Messenger RNA biogenesis [BR:
scyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMD_13090
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMD_13090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAY43728
LinkDB
All DBs
Position
complement(1525873..1527318)
Genome browser
AA seq
481 aa
AA seq
DB search
MNSSATTSWNEVRAAFQRIWGYEDFRPPQGEIIQSLLAKKDALIIMPTGGGKSICFQLPA
LLQTGLTLVVSPLVALMENQVQELRERNLPAALLHSELPSDKRRKTLQALGRQELRLLYL
SPETLLSKPVWEKLCQPQIVINGLILDEAHCLVQWGDTFRPAYRRLGTVRPALLKAKQLG
TNIALAAFTATADPLAQTKIREVLGLQQPAVFCIFPYRSNINLFIRIIWTPRGRKQQLLK
FLSDKRQQTGLVYVRTRRDSEELTAWLQEMGYATAAYHAGLGAEERRAVEAQWLSGKILF
VICTCAFGMGINKSDVRWVVHFHPPLLISEYVQEIGRAGRDGKPAEALMLISEPTGWLDP
EDKQRQKFFEENLHKQQLSAQQVLKKLPKTGEVNAVAREFPNGAIALSLLHSSGQLQWLD
PFHYSIVPGAKTESVTQSHAAKQMNQYLSTKQCRWRFLLSAFGFEEEMKNWRCGHCDNCR
T
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaattcctctgcaacaacatcttggaacgaagtccgtgctgcatttcaaagaatctgg
ggttatgaagatttccgtccaccacagggagaaattatccagagtttgttggcaaaaaaa
gatgcgctgattatcatgcccacaggtgggggaaagtcaatttgctttcaacttcctgca
ctgctacaaactggattaacgctcgttgtttcgcctttggtggcgctgatggaaaaccaa
gtgcaggaacttcgggaacgcaatttaccagctgcgcttttgcatagtgaattgccgtct
gacaagcgacgtaaaactttgcaagctttgggacgacaagagttaagattactttacttg
tcgccagaaactttactgagcaagccagtgtgggaaaaattatgtcagccgcaaattgtg
attaatggcttaatactagatgaagcgcattgtttggtacagtggggagacacttttaga
ccagcttatcgaagattggggacggtacgaccagcgctgcttaaagcaaaacagttggga
acaaatatagcactagccgcttttaccgccaccgccgaccctctagcacaaactaaaatt
cgagaagttcttgggctgcagcaaccagcagttttttgcatttttccttacagatctaat
attaacctttttattcgcataatttggacgccaagaggcagaaagcaacaattattaaaa
tttctttcagataaacgacaacaaactgggttagtttacgttcgcacaaggcgagatagc
gaggagttaactgcatggctgcaagaaatgggttacgccacagcagcttatcatgcagga
ttgggcgcagaggaacgccgcgccgtagaagcacaatggctgagtggaaaaatcttgttt
gtcatctgcacgtgtgcttttggtatggggataaataaaagtgatgtgcgttgggtggtt
cattttcacccaccgttgttgatttcagagtacgtgcaggaaattggacgcgctggacgt
gatgggaaaccagccgaggcgctgatgttgatcagtgaacctacggggtggttagatcca
gaggataagcaaagacaaaagttttttgaggagaatttgcacaagcaacaattatcggcg
cagcaagtcctgaaaaaattaccaaaaacaggggaagtaaatgctgtggcgcgagaattt
cccaatggggcgatcgctctttctctgctacacagcagcggacaactccagtggcttgac
cctttccattacagtatcgttccaggggcgaaaactgaatcagtcacacaatcacacgcg
gcgaagcagatgaatcagtatcttagtactaaacaatgtcgctggcgttttttattgagt
gcttttggttttgaggaagagatgaagaactggcgttgtggtcactgcgataattgccgt
acgtag
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