Scytonema sp. HK-05: SAMD_23550
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Entry
SAMD_23550 CDS
T09974
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMD_23550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyt03021
]
SAMD_23550
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_23550
Enzymes [BR:
scyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMD_23550
Transcription machinery [BR:
scyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMD_23550
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMD_23550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BAY44753
LinkDB
All DBs
Position
complement(2738716..2742798)
Genome browser
AA seq
1360 aa
AA seq
DB search
MTNEKMIFRNRIVDKGQLRNLISWSFTHYGTARTAVMADKLKELGFRYATKAGVSISVDD
LMVPPSKRALLEAAEAEIRATEERYQRGEITEVERFQKVIDTWNGTSEALKDEVVNHFKK
TNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDQPIKTNFREGLTVTEYIIS
SYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREFDCGTTRGIPLQAMTEGEKTLIKL
GTRLLGRAIAEDVVHPKTGEVIAVRNTPVSDDLAKEIEKSGVQEVVVRSPLTCEAARSVC
QHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFSGEVARQVRAESDG
TVRLPRKLRTRAYRTRHGEDALYVEANGSITLEIATDNADPTTQEIPVTQGSTLYVVDGQ
KIKTGQLVAEVAIGGRTTRVNTEKAVKDVASDLAGEVRFADVVPEQKTDRQGNTTTTAAR
GGLIWILSGEVYNLPPGAELVVNNGDTIDANGVLAETKLTTLHGGVVRLPEATPGKGTRE
IEIITASVVLDQATVTAQTAQGRNNYLVTTGNNQVFNLRATPGTKVQNGQVVAELIDDRY
RTTTGGLLKYAAVEVQKKGKAKQGYEVVQGGTLLWIPEETHEVNKDISLLMVEDGQFVEA
GTEVVKDIFCQNSGVIEVTQKNDILREVVIKPGDLLMVDDPEAVMGKDGTFVQPGEELLG
QVMTELRYIEYVESPEGPALLTRPVVEFAVPNNPDVPSTTSVSQQTGRSIQLRAVQRLPY
KDSERVKTVEGVELLRTQLVLEIEQEGEQDHNASPLAADIELVPDDNDPEVQRLQLVILE
SLVLRRDIAADATQGSTQTSLEVEDGQTIAPGAVIARTQILCKEGGIVRGVQKGTEAVRR
CLVLRHNDVVKMNLSAPPKVKVGNLIVEGVEIAPGVFAEESGQVVAVQKGEGKVEKAQGE
VPPTEESALATVNYSVTLRVGRPYRVSAGAVLQVDDGDLVQRGDNLVLLVFERAKTGDII
QGLPRIEELLEARKPKEACILARRSGEVKVVYGDGDEAIALKVIESNGVVTDYPLGPGQN
LIVPDGAQITAGQTLTDGPSNPHEILEIFFNLGSEEGVYACASHALQKVQTFLVNEVQSV
YQSQGIDIADKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARA
QYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAG
TGFNAYEETGPIDDYAVDVTSSVLDEVDDPLDMVLDDRTARSYQLDTPTLGADGFGTRRS
SDKSILDEDDFILPSAGDSDIDDLVEDEYEEDDDYDEDDE
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgactaatgagaaaatgatttttaggaaccgcattgttgacaaaggtcaactgaggaac
ctaatttcttggtcgttcacgcattatggaacggcgcggacagcagtgatggcggacaaa
ttaaaagagctgggattccgctacgctactaaagcaggggtttctatcagcgttgatgat
ttgatggttcctccttccaaacgagcattgctagaagctgcggaagcagaaattcgtgcc
actgaagaacgctaccaacggggagaaattaccgaagttgagcgattccaaaaagtgatt
gatacttggaacggaacttctgaagccctgaaagacgaagtagttaaccacttcaagaag
actaaccccctcaactccgtgtacatgatggcattctctggggcaaggggtaacatctcc
caggtgcgccaattggtcggaatgcgaggactgatggcagatccccaaggggaaattatt
gaccagccgatcaaaacaaacttccgcgaaggactcaccgtaacagaatacattatttcg
tcttacggtgcgagaaaaggtctagtagacacagccttgcggacggctgactctggttat
ctcacccgccgtttggtggacgtatcgcaggatgtgattattcgcgaatttgactgcggt
accaccagaggaattcccctgcaggcaatgacagaaggtgagaaaaccttgattaagctg
ggcacaaggttgctgggacgagcgatcgcagaggatgtcgtgcatccaaagacaggagaa
gttatagcagtacgtaatacccctgtttccgatgacctggcaaaggagattgaaaagtcg
ggagtccaagaagttgtcgtgcgatcgccgctaacttgtgaagccgcacgatctgtctgc
caacactgctatggctggagtttggcacacgccaagatggtcgatttgggcgaagctgtg
gggatcattgcagcacaaagtatcggtgaaccaggtacccagctgacgatgcgtacgttc
cacacaggtggtgtcttttctggtgaagtcgcaagacaagtacgcgccgaatccgatggt
accgttcgtttgccacgtaaattgcggacaagggcttaccgcacccgccacggggaagac
gccttgtatgtagaagccaatggcagcattactttagaaatcgcaacagataacgctgat
ccaacgactcaagaaattcctgttacccaaggttcaacactatacgttgtcgatgggcaa
aagattaagacaggtcagctagtggctgaggttgctattggtggacgaacaactcgtgtc
aatacagaaaaagcggttaaagatgtcgcctctgacttggcaggagaagtcaggtttgcc
gatgtcgtgccagaacaaaaaaccgaccgtcaaggtaacaccacgacaacagcagcccgg
ggtggattgatttggattctgtcaggggaagtttataacttacccccaggagcagaattg
gtggtcaacaatggtgacactatagacgccaacggtgttttagcagaaaccaagttaacg
actttgcacggcggtgttgtccgcttacccgaagcgaccccaggcaaagggacgcgggaa
attgagattatcactgcttctgtggtcttagaccaagcaacagtgacagcgcaaactgct
caaggtcgcaacaactacttagtcaccactggaaataaccaagtcttcaacctcagagca
accccaggcacaaaagtgcaaaatggtcaagtggtagctgagttgattgatgaccggtat
cgcacaaccactggtggattgctgaaatacgctgctgtcgaagtccagaaaaaaggtaag
gcaaagcagggttacgaggtggtacagggaggtaccctgctgtggattcctgaagaaacc
cacgaagtgaataaagatatctccctgctgatggtagaagacggtcagtttgtcgaagct
ggcactgaagtcgtcaaggatatcttctgccaaaacagcggcgtcatagaagtcacccag
aaaaacgacatcctgcgggaagtggtgattaagcctggagatctgctgatggtggacgat
ccagaagcagtgatgggcaaagatggcacctttgttcaaccaggtgaggaattgttaggg
caagtcatgacagagttgcgctacatcgagtatgtggaatcaccagaaggtccagcactg
ttgacccgtccggtcgttgagtttgctgtacctaacaatcctgatgtgccatcaaccaca
tcagttagtcaacaaacaggtcgttctattcaactgcgggcagtgcagcgtctgccttac
aaagactcagaacgcgttaagaccgtcgaaggtgtggaactgctgcgaacccaactggtg
ttggaaattgagcaggaaggcgaacaagaccacaatgcttcccccttggcagcggatatt
gaattggtacccgatgacaatgatccagaagttcagcgcttgcaactggtcattttggaa
tcgttagtgctgcgtcgggatatagccgcagacgccacccaaggcagtacccaaacaagc
ctggaagtagaggatggacaaacaattgccccaggtgccgtaatcgcacgtacccaaatc
ttatgtaaagaagggggtatcgtgcggggcgtgcaaaaaggaactgaggcagttcgccgc
tgcttagtattgcgtcataatgacgtcgttaagatgaatctaagcgctccacccaaggtc
aaagttggtaacttgatagtagaaggtgtcgaaattgcccctggagtctttgccgaggaa
tctgggcaagttgtggcagtccagaaaggcgaaggaaaagtggagaaggcacaaggagaa
gttccgcctactgaggaatcagcactcgctactgtgaactactctgtcacactccgtgtc
ggtcgtccctatcgcgtcagtgcaggcgctgtgttgcaggtagacgatggcgatttggta
cagcgtggtgataacttggtgttgctagtatttgaacgcgccaaaactggagacatcatt
caaggtttgcccaggattgaggaactccttgaggctcgtaagccaaaagaagcgtgtatt
ttagcacgtcgttcaggagaagtcaaggttgtttacggcgatggggatgaagcgatcgca
ctcaaagtcatcgagtccaatggcgtagtcacagattatcccctcggaccaggacaaaac
ttgatagtcccagatggagcgcaaatcacagcaggacaaacattaactgatggtccttct
aatccccatgaaattctggaaatcttcttcaacctaggttctgaagaaggagtttatgcc
tgtgctagccatgccttgcagaaggtgcagacgttcttggtgaacgaagtgcaatcggtg
tatcagtcccaaggtattgatattgctgataaacacatcgaagtgattgtccgtcagatg
accaataaagtccggatagatgatggtggtgacaccaccatgctccctggagaattggta
gagttgcgccaagtcgagcaagttaatgaagcaatggcaatcactggtggtgcccgggcg
cagtacaccccagtcctgttgggtattaccaaagcatcgttgaacaccgatagctttatt
tccgctgcatccttccaagaaacaacgcgcgtcttgactgaggctgcaattgaaggtaaa
tccgactggttgcgcggcttgaaggaaaacgtcattatcggacgactgattcccgccggc
actgggtttaatgcttatgaagaaactggtcccatcgatgactatgctgttgatgtcaca
agcagtgtcttggatgaagttgacgatccactcgatatggtgctggatgaccgcacagcc
cggagttaccaattagatactccgacgcttggggcggatggatttggtaccagacgtagt
tcagataagtcgattttggatgaggatgattttattcttccttctgctggtgacagtgac
atcgatgacctcgtagaagacgaatacgaggaagatgacgattacgacgaagacgatgag
taa
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