Scytonema sp. HK-05: SAMD_23560
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Entry
SAMD_23560 CDS
T09974
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMD_23560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyt03021
]
SAMD_23560
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_23560
Enzymes [BR:
scyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMD_23560
Transcription machinery [BR:
scyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMD_23560
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMD_23560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BAY44754
LinkDB
All DBs
Position
complement(2742897..2744774)
Genome browser
AA seq
625 aa
AA seq
DB search
MRSAQNNQFDYVKIGLASPERIRVWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDST
LQGVEVGIGAEALLRLLADINLEQEAESLREEITTAKGQKRAKLIKRLRVIDNFVATGSK
PEWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRSDPSVWDVLE
EVIEGHPVLLNRAPTLHRLGIQSFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGRPIITPSQDMVLGAYYLTAENPNATKGAGRYFASLDD
VIMAYEQQQIDLHAYIYVRYDGEVESPEPDTEPVEVIPNDDGTRTLLYKFRRVREDAQGN
MVSQYIRTTPGRVIYNNAIQEAIAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagatcagcccaaaataatcagtttgactacgttaaaatcggcttggcatcaccagaa
cgcattcgggtctggggtgagagaactttacctaacggtcaggtagtcggtgaagtcaca
aagccagagacgataaattaccgtactttaaaaccagagatggatggcttgttctgcgag
cgcatctttggaccggctaaagattgggaatgccattgtggcaagtataagagagtacgt
catagaggcattgtgtgcgagcgctgtggtgtagaagtcactgaatcgcgagtacgccgc
caccgcatgggctacattaaactcgccgcaccagtcgctcacgtttggtatctcaagggc
attcccagctatatctccatcctgttggatatgcctttgcgggatgtggagcaaattgtt
tatttcaattcctatgttgttcttagtcctggcaatgctgaaaccttaacttacaaacag
ttgctgagtgaagaccagtggctggaaatcgaagaccaaatttatagcgaagattctacc
cttcaaggggtagaggtcgggattggtgcagaagccttgttgcggttacttgctgatatc
aacttagagcaagaagccgaatctttgcgggaagaaattacaaccgccaaaggtcaaaag
cgggcaaagctgattaagcggttgcgggtgattgacaacttcgtcgccaccggttctaaa
ccagaatggatggtgatgacggtgattcccgtcattcccccagacttgcgcccgatggtg
cagttagacggtggacgatttgccacaagcgatttgaatgatttgtatcgccgggtgatt
aaccgcaacaaccgtcttgcccgcttgcaagaaattttggctcccgagattattgttcgt
aacgaaaagcggatgctgcaagaagcggtggatgctttgattgacaacggtcgtcgggga
cgaaccgtagtgggagcaaataaccgcccgctcaagtctttgtcagacattattgaaggg
aaacaaggacgtttccggcaaaacttgttgggtaaacgggttgactactccggacgttcc
gtgattgtggtgggaccaaagctgaagatccaccaatgcggtttgccacgagaaatggca
attgagctatttcaaccgtttgtcatcaaccgactcattcgcagcggcatggtgaataat
atcaaagccgcgaaaaagctgatatcccgctctgatccgagtgtctgggatgttctggaa
gaagtgattgaaggacacccagttttgctcaaccgtgcgccgacgctacaccgtttgggt
attcaatcttttgagccaattttggtggaaggtagagcaattcagctgcacccactcgtt
tgtccagcatttaacgctgactttgacggcgaccaaatggcggtacacgtaccgttatct
ttggaatctcaagcggaagcgcggttactgatgctggcgtctaacaacattttgtcacca
gcgactggtagaccaattattacacccagtcaagacatggtgttaggggcgtattactta
acagcagaaaatcccaatgctacaaaaggcgcagggcggtactttgcttctcttgatgac
gtgattatggcttacgagcagcagcaaatcgacctacacgcttatatctacgtgcgctac
gacggcgaagtcgagtcacctgaaccagatacagaaccggttgaagtgataccaaatgac
gatggtacccggactttgctgtataagttccgccgagtcagagaagatgctcagggaaac
atggtgtctcagtatatacgtacaactccaggtcgcgtgatttacaataacgcgattcaa
gaagcgatcgccagttaa
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