Scytonema sp. HK-05: SAMD_23810
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Entry
SAMD_23810 CDS
T09974
Name
(GenBank) cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt02010
ABC transporters
scyt03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SAMD_23810
03070 Bacterial secretion system
SAMD_23810
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scyt02000
]
SAMD_23810
02044 Secretion system [BR:
scyt02044
]
SAMD_23810
Transporters [BR:
scyt02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
SAMD_23810
Secretion system [BR:
scyt02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
SAMD_23810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
Peptidase_C39
ABC_tran
cNMP_binding
SMC_N
Peptidase_C70
Peptidase_C39_2
RsgA_GTPase
AAA_22
NB-ARC
AAA_29
nSTAND3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAY44779
LinkDB
All DBs
Position
2781139..2784207
Genome browser
AA seq
1022 aa
AA seq
DB search
MPSKISQQQLYQQLTTALGETSQQELAEWFTQAQIVEPAPTKQFWFSGDSPGIYIILSGK
VRLLDSAENLITTLGPGSSFGEATLFAQQDFVPYAARASSNVKLCYLKQEILQALMEKYP
NIRTYLSKKAQLWDLVMIYRQNSQLECQPSDVPGILKALSLFEQHTLDTNEEISAPPDAL
WLLYKGELRHTQGHRLTPGKIVAHPQQGIWQATQPSIAYILQDSQWQAVSEHWQQLAQFV
DPQERPPVIKDQKPRPSKSKPERIASSGNVIPFPQRSLTSTQKPKKSRPYFPSPKVKAAQ
VWGQWSKSYPFMAQQSAADCGATCLVMIGRYWGKRLSVNRLRELTNVNRSGASLRALAAA
AESMGFATRPVKASLDKFAQQPLPAIAHWEGKHYIVVYEITRNKVIVCDPAIGQLSLTHA
QFNAKWTGYALLLQPTALLKEAEEASASFWQFFEIVKPHSKVLLEVFIASVVIQVFGLVT
PLLTQLLLDRVIVQGSTLTLNAVGLGLVIFGLFRIVMNGVRQYLLDHTANRVSVALLVGF
IKHTFRLPLAFFESRYVGDIVSRIQENQKVQRFLTGEALSICLDLLTVFIYMGLMFWYNS
SMALLVLLIVPPFFLLALFTTSILRRISREIFTAGAEENSYLIQSLTGIRSVRSMAIEQT
VRWRWEELLNKLIKKSFTAQVISNRLQIISASIETLINTGLLWYGAWLVIQNQLTIGQLI
AFNMLLGNVIHPFQRLAVLWNQLQEVIVSVERINDVLEAQPEEDLLSSPRQSLTRLQGRI
RFDNVTFRYHSESENNVLENLSFEIQPEQTVAVVGRSGSGKTTLSKLILGLYPPTEGKVL
IDGQDVSNISLKSLRSQIGVVDQDNFLFGGTIRENISIAHPEASIEEIIEAARLAGADEF
IVQLPMGYETQIGEGGGMLSGGQRQRLAIARALLGNPRFLIFDEATSNLDAESERIIQNN
LKTILTGRTSLIIAHRLSTVRNADLILVLDRGVLIESGTHDELIAKKGHYYYLNQQQLPQ
AG
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaaaatttcgcaacaacagctatatcaacaactcactacagctttgggtgag
acatcacaacaggaactggcagagtggttcacacaagcacaaatcgtggagcctgcaccc
acaaagcagttctggttttcaggtgatagtcccggaatatatataattctttctggcaaa
gtcagactgttggatagtgcggagaacttaatcacaactcttggtcctggctcgtcattt
ggggaagcaacactgtttgcacaacaagactttgtgccatacgccgctagagcatcaagc
aacgtcaagctttgctatctcaaacaagagatattgcaagcattgatggagaaatatccc
aatattcgcacttacctctccaaaaaagcacaattgtgggatttggtgatgatatatcgg
caaaactcgcaactagagtgccagccatcagatgtaccagggatactcaaagccttatcg
ctatttgaacagcacaccctggacaccaatgaggaaatatccgcaccaccagatgctttg
tggctgctgtacaaaggggaactgcggcatactcagggtcacaggctgacaccagggaaa
attgtggcacacccacaacagggtatttggcaggcgacacaaccaagcatcgcctacatt
ctccaggattctcaatggcaggcagttagtgaacactggcagcaattggcacaattcgtt
gatccccaagaacgtccacccgtcattaaagaccaaaagccacgtcctagtaagtcaaaa
ccagaaagaatagccagttctggaaacgtcataccctttccccaacgttccttaacgtca
acacaaaagccaaaaaaatcacgcccctactttcccagcccgaaggtaaaagcggcgcag
gtgtggggacagtggagtaagagttatcccttcatggcacaacaaagcgccgctgactgt
ggtgctacgtgcttggtgatgattgggcgctattggggcaagcgcttgagtgtcaatcga
ctgcgggagttaaccaacgttaaccgttctggtgcatcactgcgtgctttagccgctgct
gccgaaagcatgggctttgctacccgtccagtcaaagccagtcttgacaaatttgctcaa
caacctttaccagcgatcgcccactgggaaggcaaacactacattgtcgtctatgaaatt
accagaaataaggtcattgtctgtgatcccgcgatcggtcaactaagcctaacccatgct
cagttcaatgctaagtggactgggtatgcattgctgttgcaacccacagcgctgcttaaa
gaggctgaagaagcaagtgcatcattttggcagttttttgagatagtcaaacctcactcc
aaggtactgctggaagtatttattgcttcagtcgtgattcaggtttttggactagtcacg
ccactcttgactcagctgctgttggaccgagtcattgtccaaggcagtaccctgactctc
aacgctgtcggtttgggattggtgatctttggtctgttccgcatcgtgatgaacggcgtg
cggcaatatctgctagaccacacggcaaatcgtgtctctgtagcactgctggtgggtttt
atcaaacataccttccgcttgccgttggcgttcttcgagtcgcgttacgtcggcgatatt
gtctctcgcatccaagagaatcaaaaagttcaacgtttcctcactggcgaagcactgtca
atttgcttggacttgttgacagtatttatctatatgggattaatgttctggtacaactct
tcgatggcattgctcgtgctgttgattgtgccgccatttttcttgctagcactgtttacc
acgagtattttacgtcgcatctcccgagagatttttactgctggtgctgaagaaaacagc
tacctgattcaatccctgacaggtattcggtctgtacgctcaatggcgattgaacaaacc
gtgcgctggcgttgggaggaacttttaaacaaattaatcaaaaaaagttttacggctcaa
gttatttccaaccgcctgcaaattatcagtgcaagtattgaaactttaatcaatacagga
ttactgtggtacggagcatggctggtcattcagaaccagctgaccattgggcaattaatt
gctttcaatatgttattaggcaacgtcattcatcctttccagcgactggcggtgctgtgg
aatcaattgcaggaagtcatcgtttctgttgaacggattaacgatgtcctagaagcccaa
ccagaagaagacttgctctcctcaccccgtcagtctttaacgagacttcaagggagaatt
cgctttgacaatgtcactttccgctatcactcagaaagcgagaataatgtcctagaaaat
cttagctttgaaatccagcctgaacaaacagtcgcagtggtcgggcgcagtggttctgga
aagacgactttgtcaaagttaattttaggtttatatcccccgacagagggcaaagtctta
attgacggtcaagatgtcagtaatatttctctaaaatcactgcgttctcaaattggtgtc
gtagaccaagataactttttgtttggcggtacgattcgagaaaatatcagcattgcccac
ccagaagcctctatagaagagattatcgaggcagcgcgtttagctggggcggatgagttt
attgtgcaactaccaatgggttacgaaacccaaatcggtgaaggtggtgggatgctttct
ggcggacaacgccaacgtctagctatagcccgcgcattgctagggaatccccgattttta
atttttgatgaagccaccagcaacctagatgcggagtcagaacgcatcatccagaacaac
ctgaaaaccattctgactggacgcaccagtctgattattgcccatcgcctttccaccgta
cggaatgccgacttgattctggtgttagaccgaggcgtcttgatagaaagcgggacacac
gacgaattaatcgccaaaaaaggacattactactacctcaaccagcaacaacttccccaa
gctggttga
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