Scytonema sp. HK-05: SAMD_26640
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Entry
SAMD_26640 CDS
T09974
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMD_26640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyt03019
]
SAMD_26640
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_26640
Enzymes [BR:
scyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMD_26640
Messenger RNA biogenesis [BR:
scyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMD_26640
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMD_26640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
HTH_11
MarR_2
RPA_C
HTH_28
HTH_41
DUF2492
Motif
Other DBs
NCBI-ProteinID:
BAY45062
LinkDB
All DBs
Position
3110714..3112813
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AA seq
699 aa
AA seq
DB search
MATKLQQQALLLLRQALDNPTADFRVGQWEAIEEIIERRSRLLVVQRTGWGKSLVYFLAT
RLLRDEGAGCTLLISPLLALMRNQIAAAQRIGVQAVTINSSNTNEWELVQTQLLTGKVDI
LLISPERLANDEFQRKILLPISQRIGLFVVDEAHCISDWGHDFRPDYRRIVRILQALPQN
IPALATTATANNRVVEDIITQLGQRLRVSRGALTRKSLHLQNIYIPSPAARMAWLAEHLP
KLPGSGIIYALTVRDADRVAEWLRTQGINAKAYHSELDSDAREALEDQLLKNKIKALVAT
TALGMGFDKPDLGFVIHYQRPGSVVHYYQQVGRAGRAVDQAYGILLSGDEDDEITNYFIR
TAFPPQVHTHQVLNVLNQAEDGLSIPQLEQKLNLSRGQIDKVLKLLSLESPAPVIKQDSK
WYATAVNYQPDAEKIEKIIQIRRQEQARMLEYMHSQQCLMSFLAAELDDPNPTACGKCAV
CLGKPLLPETCSIQLVNQAIQYLRRTDQIIEPRKRWAAQALPNYGFSGNIQNKLKAEEGR
ALSLWGDAGWGELVKQGKYQDNHFDDALVQGTFEMIQRWQPQPFPSWVTCVPSLNRPELV
PNFAQRLADKLGIPFMPIVRKIRATELQKNMSNSYQQANNLDNAFAVDSWKGMNNSVFLV
DDIVDSRWTLTVVAALLRRAGCGLVYPVALALNTFSQGD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaacttcaacaacaagcgctattacttctacgtcaggcgctggataacccg
acagctgattttcgcgttggacaatgggaagcaattgaagagataattgagaggcgatcg
cgtttacttgtcgtccaacgcactggttggggcaaaagtctagtttattttttagcaacg
cgcttgttacgagacgaaggtgctggttgtactcttttgatttcaccattacttgctctg
atgcgaaaccaaattgcagcggcacaacgaattggtgtacaagccgttacaattaactcc
agcaatacaaatgagtgggaacttgtacaaacccaattgctaacaggaaaagtagacatc
ctgctcatttctccagaaagattggctaacgacgaatttcaaagaaaaattcttttaccc
atatctcaaagaataggtttatttgtcgttgatgaagcccactgtatatccgactgggga
catgattttcgccctgattatcggcgaattgtgagaattttacaagcgctgcctcaaaat
atcccagcccttgccacaaccgctacagcgaataatcgagtggttgaagatattatcact
cagttgggacaaagattgcgtgtgtcaagaggtgctttaaccagaaaaagtttgcatttg
caaaatatttatataccgagtccagcagcaagaatggcatggttagcagaacatcttcct
aaattacctgggagtggtattatttacgcattaactgttagagatgctgaccgagttgct
gagtggttaagaactcaaggtattaatgctaaagcttaccatagcgagttagacagtgat
gctcgtgaggcattagaagaccaacttctcaaaaacaaaatcaaagcattagtggcaacg
acagctttaggaatgggttttgataaaccagatttaggatttgttattcattatcaacgc
cctggttctgttgtacactattatcagcaagtaggacgagccggtagagcagtagaccaa
gcatacggaattcttctgagcggtgatgaggacgatgaaattaccaactactttatcagg
actgctttcccaccacaagtccatacacaccaagttttaaatgttctcaatcaagcagaa
gatggtctttctattccacaattggaacaaaaacttaatctttctagagggcaaattgat
aaagttttgaaactgctgtcgttggaatctcctgctcctgttattaagcaagattcaaaa
tggtatgctacagcagtcaattatcaacccgacgcagaaaagattgaaaaaatcatacaa
atccggcgtcaagaacaagctaggatgttggaatatatgcatagccaacaatgcctgatg
tcttttttggcggcagagttagatgatccaaatccaactgcttgtggcaaatgtgccgtg
tgtttgggcaaacctttattacctgaaacctgctcaatacagcttgtcaatcaagcaatt
cagtatttacgtcgtactgaccaaatcattgaaccacgcaaaagatgggctgcacaagcg
ttgccaaattatggcttttctggcaacattcagaataaattaaaagcagaggagggaaga
gcattatctctatggggtgatgcaggttggggagaattagtcaaacaagggaaatatcaa
gataatcattttgacgatgcactcgtacaggggacttttgaaatgattcaacgttggcaa
ccgcagccctttccctcgtgggtaacttgtgtcccctcattgaatcgtccggaacttgtg
ccgaattttgctcaacggctcgctgataaattaggcataccctttatgccaattgtgcga
aaaattcgcgcaactgagttacaaaaaaatatgagcaacagttaccaacaagctaataat
ttggataatgcctttgcggttgactcttggaaaggaatgaacaattctgttttcttagtt
gatgatatcgttgattcccgttggactttgactgtagttgcggcacttttgcgtcgtgct
ggttgtggattggtttaccctgtggcattagcacttaatacattcagtcaaggtgattag
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