Scytonema sp. HK-05: SAMD_27450
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Entry
SAMD_27450 CDS
T09974
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SAMD_27450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyt03021
]
SAMD_27450
Transcription machinery [BR:
scyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMD_27450
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
BAY45143
LinkDB
All DBs
Position
complement(3194605..3195780)
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AA seq
391 aa
AA seq
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MNQANNVLENIHQPDELEIMNQPEIDLEELLIDDEEDLLINDEGELDEFLEPQSDEDDAK
SGKAAKSRRRTQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREK
LSQQLAREPKDSEWAEAVQIPLPQFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLS
FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI
SRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG
DFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN
VTRERIRQIEAKALRKLRHPNRNSVLKEYIR
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggctaacaacgtactcgaaaatatacatcagcctgatgagctagaaataatg
aatcagcctgagattgacttagaagaactcttgattgacgacgaagaggacttgctgatc
aacgatgaaggcgaactcgatgaatttttagagcctcagtctgatgaggacgacgcaaag
tctgggaaagccgctaaatcgcgtcgtcggactcaaactaagaaaaagcattacaccgag
gattcgatccgcctttacttacaagaaataggtcgaattcgcctgcttcgtgcagacgaa
gaaattgaattggcacggaagattgccgatttactggaattagagcgagtacgcgaaaaa
ctttcacagcagttagctcgtgagcctaaggacagtgaatgggcagaggcagtacaaata
cccttgccacaatttcgttatcggctgcatgttgggcgcagagcgaaagacaagatggta
caatctaacctgcgccttgtagtttcaattgctaaaaagtatatgaatcgaggcttgtct
ttccaagacttgattcaagaaggcagtcttggtttgattcgcgccgccgaaaagtttgac
cacgaaaaaggctacaagttttctacatacgcaacatggtggattcgtcaggcaatcacg
cgtgcgatcgctgatcaatcccggactattcgccttccggttcacctgtacgaaaccatt
tcccgaattaagaaaacgactaagctgctttctcaagaaatgggtcgcaaacccaccgag
gaagaaatcgccactcgtatggaaatgactatcgagaagctgcggtttattgctaaatcg
gcacaactgccgatttcactagaaacgcctattgggaaagaagaagactctcgactgggc
gattttattgagtcggatggcgaaaccccagaagaccaagtttccaaaaatctcctacgg
gaagatctggaaaaagtcctcgacagcctcagtccccgtgaacgtgatgttctcagactg
cgctacggtttggatgatggtcgcatgaagaccttagaagaaattggacaaattttcaat
gtgactcgcgaacgaattcgtcaaattgaggcgaaggcacttcgtaagttacgtcacccg
aaccgcaacagcgttctcaaggagtatatccgttaa
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