Scytonema sp. HK-05: SAMD_28170
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Entry
SAMD_28170 CDS
T09974
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03410
Base excision repair
scyt03430
Mismatch repair
scyt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAMD_28170
03430 Mismatch repair
SAMD_28170
03440 Homologous recombination
SAMD_28170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_28170
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SAMD_28170
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SAMD_28170
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMD_28170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF2399
Motif
Other DBs
NCBI-ProteinID:
BAY45215
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Position
complement(3272840..3275191)
Genome browser
AA seq
783 aa
AA seq
DB search
MPEQQWTLATTEQPPEWFIQAVKQYTPTSGALFAAQLLWQRGIRDKPQLAAFVNTKTYQP
ASPFEFGQEMHLAVERLQQARDAGEKVAIWGDFDADGITSTAVLWDGLGQFFTQNTQLIY
YIPNRLTESHGLNCQGIEKLAKQGFQLIVTCDTGSTNISEIIYAKQLGIDVIVTDHHTLP
PERPPVTAIINPRYLPQTHQLFHLSGVAVAYKLVEAFYQTLPNIPQQPLQDLLDLVAVGL
IADLVQLSGDCRYLAQLGIGRLQEDFKKPPGERRRPGVGRLLELCQKSGDRPTDISFGLG
PRINAVSRIQGDASFCVELLTSRDQKRVKELAEVTELANTRRKSLQKDVAQQVAQKLSKM
DLSTTSVIVLEDPQWAVGVLGLVAGQVAQETGRPTILLSTEGVGAGEESSQSPIPNPQSL
ARGSARSVNSVDLYQLVKDQAHLLHRFGGHPYAAGLSLPVENIPLFTEAINQRLRQSLGG
ATLTPTVQADLAVTVADLGKELFLELKLLEPCGMGNPVPKLLIENCWFENAWHRNQQDSQ
GKKVQYIKAEFDIRDDSTRSPFPGVWWGHYKDELPLGRCDCIAELDYNTFKKRYEIRLIA
VRSRQQSAISNQQSALILDWRNPLLEKDSALSTQDLAVVIKECPTSWDDLRVWLRRSLHN
QQPLALAWSKPDPKPPEQIWLTLVGIAKYLSRTNLSVTRVELLEKLGIGDQALLLGLRSL
KYLGFKITRQDRFLLFTQGSAIESTLAEAGISQFLAAVREEQFQQQYFADVPLSTIEAIV
HIS
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacaacagtggactctcgcgacaactgaacaacccccagaatggttcatccaa
gctgtgaagcaatatacacccacatcaggtgcactttttgctgcacaattgttgtggcaa
cgaggaatacgagataaaccacaattagcggcttttgtcaatacaaaaacttatcaacct
gcaagtccgtttgagtttgggcaagaaatgcatctggcggtggaacggttgcaacaagca
cgagacgctggtgaaaaagttgccatttggggagactttgacgctgacggtatcacttct
actgctgtcctgtgggatggcttgggacaattttttacccaaaacacgcagcttatttac
tacattcccaatcggttgacagaatcccacgggctgaactgtcaaggaattgagaagcta
gcaaaacaaggatttcagttaattgtaacctgtgacactggcagtacaaatattagtgaa
attatttatgctaagcaactagggatagatgttatagttacagaccaccacactttacct
ccagaacgtccacccgtaacggcaattattaacccccgctatttgccacagacacatcag
ctatttcatctttctggggtggcggtggcttacaagttagtcgaagctttttatcaaacc
ctgccaaatatcccgcaacaaccgctacaggatttattagatttagtagcggttgggtta
attgctgacttggtgcagttgagtggagattgtcgctacttggcacaattgggaattggg
cgactgcaagaagattttaaaaaaccaccaggagaaagacggcgtccgggagtcgggcga
ttgttggaattatgccagaaaagtggcgatcgccccacagatatttccttcggtttgggt
ccccgaattaacgctgtcagccgcattcaaggcgatgcttctttttgcgtggaattactc
acaagccgcgaccaaaagcgtgtcaaggaactagcagaagtcacagaattagcaaacacc
cgtcgcaaatctttgcagaaagatgttgcccaacaagtcgcgcaaaagctttccaaaatg
gacttatcaacgactagcgtcatcgttctggaagaccctcaatgggctgttggcgtcttg
gggttagtcgcaggacaagtcgcacaggagacaggacgtccgacgattttgttgagtacc
gagggagtgggggctggggaagaatcttctcaatcaccaatccctaatccccaatcccta
gcccgtggttctgcgcgttcggtgaactcggtcgatttatatcaattggtaaaagaccag
gcacatttgttgcatcgatttggtggacatccctatgcagcagggttaagtctcccagta
gaaaatattccattatttacagaagcaattaaccaaaggttgcgccaatcattgggaggt
gcaaccctgacaccaactgtgcaagcagacttagctgtcacagttgcagacttgggaaaa
gagttatttttggaactgaaactactagaaccttgtggaatggggaacccagttccgaaa
ctactgattgaaaactgctggtttgaaaatgcttggcatcgcaatcaacaagattcgcag
gggaaaaaggtacagtacataaaagccgagtttgacattcgggatgattcgacgagaagc
ccttttcctggtgtgtggtggggacattataaggatgaattacctctaggaagatgtgat
tgtattgctgaactggactacaacaccttcaaaaaacgctatgaaatccgactgatagcc
gtccgttcgcgtcagcaatcagcaatcagcaatcagcaatcagcacttatactagactgg
cgtaacccattattagaaaaagactcagcactcagtactcaggacttagcagttgtgatt
aaagagtgtccaaccagttgggacgatttacgggtttggttgaggcgatcgcttcacaac
caacaacccttggcgctggcttggtctaaacccgaccccaaaccaccagaacaaatctgg
cttacccttgtgggaattgccaaatacctcagtcgcacaaatctatcagtcacccgcgtc
gagttattggaaaaattgggtataggtgaccaagccttacttttagggttaagaagttta
aaatatttgggtttcaaaatcacacgtcaagaccgttttttgcttttcacccaaggttca
gccatagaatcaactcttgcagaagctggtatttcacaatttttagccgccgtacgcgaa
gaacagtttcagcaacagtactttgctgatgtacctttatctactattgaggcgatcgtt
catatttcataa
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