Scytonema sp. HK-05: SAMD_30610
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Entry
SAMD_30610 CDS
T09974
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMD_30610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyt03019
]
SAMD_30610
03016 Transfer RNA biogenesis [BR:
scyt03016
]
SAMD_30610
Enzymes [BR:
scyt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SAMD_30610
Messenger RNA biogenesis [BR:
scyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAMD_30610
Transfer RNA biogenesis [BR:
scyt03016
]
Prokaryotic type
tRNA degradation factors
SAMD_30610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
BAY45458
LinkDB
All DBs
Position
complement(3564042..3566399)
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AA seq
785 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKLLEKKLGCEDEASLQKLHIALEILERIGVLVKERGKYRR
VTEEGLIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLILERSNHTLLARIKQVESGYRAVPLDDRLLFELKVQAEGIKLEQAVDHLAHVE
ILRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPEGVQEAASKLPKKLLKA
DLKNRLDLRHSLTLAIIGNNNDPKVIENAFTLEKTSAGNWRLGFHIPDIAHLIQPDEALD
REALKRGRSVYLGELVLSMLPEVVAERCGLLPGSDRLALSFLITVDSKSGVVLEWEIQPS
VVKVDVSLSEQQTEAILNNQSTENSAQIVEIVQQLGSLQQLLKQVRLARGCLQLNLPPNQ
NPYHDEGSLGCVVVNDLPVHSLLTEFVLLVNQLMATHLNALGIPAIWRIQGAPDTEDVQE
MLKLAINLGVELTLEPEIEIQPLDYQQLTRVFAESASEQVLTYLLQDTLKPATYSTTKGS
HFGLALPEYTHFTAPLRRYPDLLMQRVFYALLEHGRDRRNTRVKERVNLRHSSSHGEINW
NVLPPELQQELQSDLTRVLIQLNDREKEVQEAEADLAGLQRASLMKQRIGEVFTGVITGV
QSYGFFVEIEVPPAESNTVGNPRVPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASY
RLGDRVAVQVKSVDYYRQQIDLVTVGSDGAVFSKDVSIPNRDDSDLYLAHEDMEPDDLEQ
YAEDE
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacacttctggcaaatttcactgatgataaattagtggctcgt
aaacttttggaaaagaaacttggttgcgaagatgaagctagtttacaaaaacttcatatc
gctttggaaatactggaaagaatcggagttttagtcaaagaacgtggcaagtatcgtcga
gtcacagaagaagggctgattgaagcaaaactccgttgttccagtaaaggcttttgcttt
gcaattcaagatgtggaaggagctgaagatatttatatccgggaaagccatctgagtaat
gcttggaatggcgatcgcgttttggttagagttcttaaagaaggtagtcgtcgccgctcc
ccagaaggagaagttaagttaatcttagaacgctcgaatcacaccttactagcgcggatt
aagcaagtcgaaagtggatatcgtgccgttcccttagacgataggctgctgtttgaactc
aaagtgcaagcagaaggcattaagttggaacaagcagttgaccacctcgctcatgtggaa
attttgcgttacccattagcacaatatccaccattgggtcgggttgtgcaaatccttgga
agcgatgcagaagcagcggcggatatagatttagtcacctgcaaacacgacctttcgcgg
acttttccagaaggcgtacaagaagcagcctcaaaattgcccaaaaagctgctcaaggca
gatttgaaaaatcggctggatttgcggcactcattaacgttggcaattattggcaacaac
aatgacccaaaggtgatagaaaatgctttcaccttggaaaaaacaagcgctggaaattgg
cgcttgggctttcacattcctgatattgctcacctgattcaaccagacgaagccctcgac
cgagaagcactcaagcgggggcggtcagtatatctgggagaattggtactgtcgatgttg
ccagaagttgttgccgaacgctgtggtttattgcccggaagcgatcgcttggctctatct
tttttaataacggttgattcaaaatcgggagttgtgctggagtgggaaattcaacccagt
gtcgtcaaagtagacgtttcattgagcgaacaacaaacagaggcaattctgaacaaccaa
tctactgaaaactcagcgcaaatcgtagagatagtccaacaactcggtagtttacagcag
ttgttaaaacaggtacgcttggctcgtgggtgcttgcagttaaatctgccaccaaaccaa
aacccataccatgatgagggctctttgggatgtgtggtagtgaatgatttacctgtacac
tccctgttaactgagtttgtgctactcgttaaccaactgatggcaacccatttgaatgcc
ctaggtatccctgccatttggcgaatccaaggcgcacccgataccgaggatgtccaagaa
atgctgaaattagcaatcaatctcggcgtcgaactgacactagagccagaaatagagatt
caaccgcttgattatcaacagttgaccagagtttttgcagaatcagcatccgagcaagtt
cttacctacttgttgcaagacacactcaagccagctacgtacagtacaaccaaaggatct
cactttggcttggcattaccagaatatacccatttcactgccccgttgcggcgttacccg
gatttgctgatgcaaagggtattttatgcattacttgaacacggacgcgatcgccgcaac
acccgtgtcaaagaacgtgtcaacctgcgccactcctccagccacggtgaaattaactgg
aacgtcctaccgccagaattgcaacaagaactccaaagcgatttgacgagggtccttatc
cagctcaacgatagagaaaaagaagttcaagaagcagaagctgacttggcaggattgcaa
agagcctcactgatgaaacagcgtatcggcgaggttttcactggtgtgatcacaggagtc
caatcctacgggttctttgtagaaatcgaagttccaccagccgagtcaaacacagttggc
aatcctcgcgtaccactgcgggtagaaggactggtacacgtcagttctctcaaagacgat
tggtatgagtatcgcgccagacaacaagcattgtttggtcgtaagaaccgcgcttcctat
agactaggcgatcgcgtcgctgtgcaggttaagagtgttgattattaccgccagcaaatc
gatttagtcactgttggtagcgatggcgctgtttttagcaaggatgtcagcattcccaat
cgcgatgactcagacctgtacttagcacacgaggatatggaaccggatgacttagaacag
tatgctgaggatgaatga
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