Scytonema sp. HK-05: SAMD_31090
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Entry
SAMD_31090 CDS
T09974
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMD_31090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyt03019
]
SAMD_31090
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_31090
Enzymes [BR:
scyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMD_31090
Messenger RNA biogenesis [BR:
scyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMD_31090
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMD_31090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
GerE
DUF742
HTH_38
HTH_24
Helicase_Sgs1
HTH_5
TnsD
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BAY45505
LinkDB
All DBs
Position
3623823..3625979
Genome browser
AA seq
718 aa
AA seq
DB search
MPENPNLEQALKYYFGYDSFRLGQRQIIEQALQNRDLMIVMPTGGGKSLCFQLPALLKKG
LTVVVSPLIALMQDQVESLRDNGIAATFLNSSLNAYKVRSREEYILSGKVKLLYVAPERL
LSDRFLPFLDLVHHQVGISAFAIDEAHCVSEWGHDFRPEYRQLKLLRKRYPDIPVLALTA
TATDRVRTDIIQQLGLKQPSIHLSSFNRHNLYYEVRSKTKYAYAEVLELIRETEGSGIIY
CLTRKKVDEITLKLQHDKISVLPYHAGLTDEERSKNQTRFIRDDVRVMVATIAFGMGINK
PDVRFVIHFDISRNLESYYQESGRAGRDGEPSRCILFYSYSDVKTIEFLINQKPDPQEQL
ISKHQLRQMIDYTEGTDCRRTIQLGYFGERFAGNCGNCDNCRYPKPVQDWTIEAMKFLSC
VARCKERFGMGHIIDVLRGGKSQKITQYEHDKLSTHGIGKDKTADEWRMLGRSLLHQGLL
EQSSDGYAVLKLNALSWEVMRRQRTVSIAVPVAQKITWEEGDEKAAEVEMLLQRLRALRK
QIADAQSVPPYVIFADSTLKLMAQIQPQTLREFSKLSGIVSHKVSNYGEKFLAEIRAYRQ
EQGLSNQQDNSTRFQDLPSETELLTLQLHQQGFSVAEIAAKRNLRPTTVIRHLSDLIEKN
QSVDFNLLVPVEKQQKILQVLETLGDISLTPIKEYLGDSYSFDEIRLIRGKWRRESKK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagaatcccaatttagaacaagcgctgaaatattactttggctacgacagcttc
cgcctcggacagcggcaaattatcgaacaagcgctacaaaatcgggatttaatgattgtt
atgcccacagggggcggaaagtctttgtgctttcagctaccagcattgctaaaaaaaggt
ttaaccgtggtggtgtcaccgctgatcgctttgatgcaagaccaggtggaatcactgcga
gataatggaattgccgcaacatttcttaatagcagtctgaacgcatataaagtgcgatcg
cgcgaagaatacatcctcagcggtaaagtgaaactgctgtacgtcgcgccagaacgccta
ctgagtgacagatttctcccgtttctcgacttagttcatcatcaagttggcatttccgcc
tttgctattgacgaagcacactgtgtttctgaatggggacacgactttcgtccagagtat
cgccaactgaagttactgcggaaacgctacccagacattcccgttcttgccttgaccgcc
acagcaaccgatcgcgtccgtactgatattatccaacaactggggctgaaacaacccagc
atccatctttccagcttcaaccgccacaacctttactatgaagtccgttccaaaaccaag
tatgcttacgccgaagtgttggaactcatccgggaaacagaaggttcaggaattatctat
tgcttgacgcgcaaaaaagttgatgaaatcactctgaaactgcaacacgataaaatttca
gtcttgccttatcatgccggattaactgatgaagaacgcagcaaaaatcaaactcggttt
attcgggatgatgtgcgtgttatggtggcaacaattgcctttggcatgggaattaacaaa
ccggatgtccgatttgtcattcactttgatatctcccgtaatttagaaagttattatcag
gaatcaggtagagcagggcgagacggagaaccatctcgctgtatactcttctacagttac
agtgatgtcaaaacaattgaatttctgatcaaccaaaaaccagatccccaagaacagttg
atttccaaacatcaactgcggcaaatgatagactacaccgaaggaaccgactgccgacgt
acaattcagttaggttattttggggaacgttttgcagggaattgtggcaactgtgacaac
tgccgttatcctaaaccagtacaagactggaccattgaagccatgaagtttttatcttgc
gtggctcgatgtaaagaaagatttggtatgggtcatattatagatgtgttgcggggagga
aaaagccaaaaaattactcaatacgaacacgacaaactttctacccacggcattggcaaa
gataaaacagcagatgagtggcgaatgctggggcgttctctgttgcaccaaggattgcta
gaacaaagcagcgatggttacgctgtactaaaacttaacgccctgagttgggaagttatg
cggcgacagcgaacagtttcgattgcggttcccgtagcacaaaagataacttgggaagag
ggggatgaaaaagccgccgaagtggaaatgctattgcagaggttgcgagctttacgcaaa
caaattgcagacgctcaatctgtcccaccgtacgtcatctttgccgattctaccctaaaa
ttaatggcgcagatccaaccccaaaccttaagggaatttagtaaactttctggcatagtt
agtcataaagtttccaactatggcgaaaaattccttgcagaaattcgcgcttatcgtcaa
gaacaaggtttgtcaaatcaacaggataattccacacgttttcaggacttaccttcagaa
actgaattattgactttacagttacaccaacaaggttttagcgttgcagaaattgcagca
aaacgcaatcttcgcccgacaacagttattcgtcatctttccgatttaatagagaagaat
cagtcagtagatttcaatctgttagttcctgtagagaagcagcagaaaattttgcaagtc
ttagaaactcttggcgatatttccctgaccccaattaaagaatatcttggggatagctat
agctttgatgaaattcgcctcatacggggaaaatggcgacgggaaagtaagaaatag
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