Scytonema sp. HK-05: SAMD_31130
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Entry
SAMD_31130 CDS
T09974
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt00061
Fatty acid biosynthesis
scyt00071
Fatty acid degradation
scyt01100
Metabolic pathways
scyt01212
Fatty acid metabolism
scyt02024
Quorum sensing
scyt04146
Peroxisome
Module
scyt_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SAMD_31130
00071 Fatty acid degradation
SAMD_31130
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SAMD_31130
09145 Cellular community - prokaryotes
02024 Quorum sensing
SAMD_31130
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
scyt01004
]
SAMD_31130
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scyt04147
]
SAMD_31130
Enzymes [BR:
scyt01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SAMD_31130
Lipid biosynthesis proteins [BR:
scyt01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SAMD_31130
Exosome [BR:
scyt04147
]
Exosomal proteins
Exosomal proteins of breast milk
SAMD_31130
Exosomal proteins of breast cancer cells
SAMD_31130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
BAY45509
LinkDB
All DBs
Position
3629508..3631502
Genome browser
AA seq
664 aa
AA seq
DB search
MSKTYEISAILSNLTERERQELQRLADYSNLKSLPEIWPLVAKRFGDNVALRDPHAKPEV
VITYTQLVQKIQQFAAGLQALGVKAGERVSLISDNSPRWFIADQGIMTAGAVDAVRGSQA
EREELLFILGNSGSRALVVEDLKTFNKLRPRLEDLAIQLVVLLSDEAPPTDETLKILNFA
QLMEIGANHTLEPVEQTPDTLATLMYTSGTTGKPKGAMLSHRNLMHQILALGAVVQPQVG
DMALSILPTWHVYERSCEYFLLSQGCTQIYTNLRSIKRDLKEFKPHYVVCVPRLLESIYE
GVQKQFREQPANKQRLINYFLGVSEKYIKAQRIAQGLSLTNLNPSTFEQLAARMQATALF
PLHALGERLVYAKVQEATGGRIKQMFSGGGALPKHIDDFFEIIGVEILQGYGLTETSPVT
HGRRYWRNLRGSVGQPIAATETKIVDPETRKPLPTGERGLVLLRGPQIMQGYYQNPEATA
KAIDADGWFDSGDLGWVTPQNDLVLTGRAKDTIVLTNGENIEPQPIEDACLRSPYIDQIM
LVGQDQRSIGALIVPNLEALEKWAETQNLHLRLPDEAAKEQNKEDSANKTQVSVESKIIQ
DLFRQELNREVQNRPGYRPDDRIGPFKLILEPFSIENGMMTQTLKIRRHVVMERYRDIIN
GIFA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaacatacgagatttctgccatattatctaatcttacggagcgagagcgccag
gaattacagcgtttagcggattactctaatctaaagtcgctaccagaaatttggccgttg
gtagcaaagcgatttggtgataatgttgccctgcgtgaccctcatgctaaaccagaagtt
gtgattacatatacgcaactcgttcaaaaaattcaacaatttgctgctggattgcaagca
ttaggggtgaaagcaggagaacgcgtctccctgatttcggataacagtcctcgctggttc
attgcagatcaaggtattatgactgctggggcagttgatgcagtgcgtggctcccaggca
gaacgggaagaactgttatttatcttgggaaatagtggtagcagggcgcttgttgtcgaa
gatttgaaaactttcaacaagcttagaccacgtcttgaggatctggcaattcaactggtg
gttttgctttccgatgaagcaccaccaacagacgaaactctgaaaatacttaacttcgct
cagttgatggaaataggggcaaaccatactttagaaccagtagagcaaacccccgacact
ctggcaaccctaatgtatacttctggcacgacgggcaaacccaaaggcgcgatgctttct
cataggaatttgatgcaccaaattttagcgcttggggcagttgtgcaaccgcaagtggga
gacatggctctcagtatcctgcccacgtggcacgtctacgaacgcagttgtgagtatttt
ttactttctcaaggttgtacgcaaatttacacgaacttgcgctctatcaaacgggatttg
aaagaatttaaaccccattatgtggtatgtgtgccacgattattggaatcaatttatgag
ggagtgcaaaagcagttccgcgaacaacctgcaaataagcaacgtttgataaactacttt
ctgggcgttagcgaaaagtatatcaaagcgcagcgaattgcccaaggattgagtttaaca
aatctcaacccctcaacatttgagcaattggcagctcgtatgcaagcaactgctttgttc
ccactccatgctttgggagaacgacttgtttatgccaaggtacaggaagcaacagggggg
agaatcaagcaaatgtttagcggtggtggtgcgcttcccaagcacatagatgactttttt
gaaattattggtgtggagattttgcagggctatggcttaacggaaacttctcctgtgact
catgggcgtcgttattggcggaatttacgtggttcagttgggcaaccaatagcggctaca
gaaacgaaaatagtagatcctgagactcgtaaacctttacccaccggggagcgaggtttg
gtgctgctgcggggaccacaaattatgcaaggctattaccaaaaccccgaagcaacagcg
aaagcaattgacgcggatggttggtttgatagcggggatttgggttgggtgacaccgcaa
aatgatttggtactaaccggacgggcaaaagatacgattgtattaaccaatggggaaaat
atcgagccgcagccaattgaagatgcgtgtttgcgatcgccctacatagatcagataatg
cttgttggacaagaccaacgcagtatcggtgcattgattgtccccaatttggaagccctg
gaaaaatgggctgaaactcagaatctgcatctacgtctaccagatgaagccgccaaagaa
caaaataaggaggactcagcaaacaaaacgcaagtcagcgtggagagtaaaataattcag
gatttatttcggcaagaattgaatcgggaagtgcaaaatcgtccaggctatcgaccggat
gaccgcattggtccgttcaagctgattctggagccgttttcaatcgaaaatggcatgatg
acacaaactttgaaaattaggcgacacgtggtgatggagcgctatcgcgatattattaac
ggcatatttgcctaa
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