Scytonema sp. HK-05: SAMD_31240
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Entry
SAMD_31240 CDS
T09974
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scyt03016
]
SAMD_31240
Enzymes [BR:
scyt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SAMD_31240
Transfer RNA biogenesis [BR:
scyt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SAMD_31240
Prokaryotic type
tRNA splicing ligases
SAMD_31240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAY45520
LinkDB
All DBs
Position
3641364..3642824
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AA seq
486 aa
AA seq
DB search
MAIKEFLKQISDTIWEVPVSYKEGMRVPARIYATEKLIEDFDEAVYDQVTNVATLPGVTK
YALCMPDGHFGYGFPIGGVAAMDVEEGGVISPGGIGFDINCGMRLLVTNLTYDEVKPDIK
KLVDKLYQRVPAGVGSTGFVKLSRNDFREVAEQGAQWCIRNGYGWEEDLQLMEENGCLKG
ADSSKISEKAIDRGFNQIGTLGSGNHYLEIQVARPENIFDKELAASMGITMPNQVVVMFH
CGSRGFGHQVATDYLQIFLKVMESKYGIKILDRELACAPFNSPEGQAYFTAMKCGINMSF
ANRQVILHRVREVFSEIFGYSAEELGMRMVYDVAHNTAKLERHIIDGKERSLLVHRKGAT
RAFGPGMQDVPERYKDIGQPVIIGGSMETGSYLLVGVPTGDQTFFSTAHGSGRTMSRAKA
RKTYRGEALKKDMEKRGIYVRSNSYQGLAEEAGAAYKNVDDVIEAAELAGISKRVVRLTP
IGNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggctattaaagaatttttaaagcaaatctctgacacaatttgggaagttccggtttcc
tacaaagaggggatgcgagttcccgcccgaatctatgccacagaaaagttaattgaggac
ttcgacgaagctgtttatgaccaagtgaccaacgtagcgacacttccaggcgtaacgaag
tacgccttatgtatgcctgacggacactttggttatggttttcccatcggtggtgtggcg
gcgatggatgtcgaggaaggaggtgtgatttctcctggcggtatcggtttcgatatcaat
tgcggtatgcgcttgttggtcaccaacctgacttacgatgaagtgaaaccagatatcaaa
aaactggtagacaagctttatcaaagggttccagctggggtgggaagtactggttttgtg
aaactttcacggaatgattttcgcgaagtggctgaacaaggggcacaatggtgcatccgc
aatggctacggttgggaagaagacctgcaactgatggaagaaaacggatgccttaaaggt
gctgattcttccaaaattagtgaaaaggcgattgaccggggtttcaaccaaatcggcact
ttggggtctgggaaccattatctagaaattcaagttgctcgaccagaaaacatttttgat
aaggaattagccgcgagtatgggaattaccatgccaaatcaggtggtggtgatgttccac
tgcggtagtcgaggatttggtcatcaagtcgcaactgactatctgcaaatctttttgaaa
gtcatggaaagcaagtacggcatcaaaattctcgacagagaattagcttgtgcgcctttt
aactctcctgaaggtcaggcatattttaccgcaatgaaatgcggtatcaatatgtctttt
gccaatcgtcaagtcatcttgcaccgcgtccgcgaggtgttttcggaaatttttggatac
tcggcagaggaattgggtatgcgcatggtttatgatgtcgcccataataccgcgaaatta
gagcgccatattatagatggcaaagagcgatcgctcctcgtccaccgcaagggtgcaaca
cgcgcttttggacctgggatgcaagatgtacctgaacggtacaaggatattggtcagccg
gtgattatcggtggcagtatggaaactgggtcttatttgttagtgggtgtaccgaccggc
gaccagactttcttcagcactgctcatggtagcggacgcactatgagtcgggcgaaagcg
cgaaaaacctatcgtggcgaagcactcaagaaggatatggaaaagcggggcatttatgtc
cgcagtaactcttaccaaggattggcggaggaagccggtgcagcatacaagaatgtagat
gatgttatcgaagcggctgagttagctgggattagtaaacgggtggtacggttgactccg
attgggaatattaaggggtag
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