Scytonema sp. HK-05: SAMD_31450
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Entry
SAMD_31450 CDS
T09974
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyt03032
]
SAMD_31450
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_31450
Enzymes [BR:
scyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SAMD_31450
DNA replication proteins [BR:
scyt03032
]
Prokaryotic type
DNA Topoisomerases
SAMD_31450
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SAMD_31450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BAY45540
LinkDB
All DBs
Position
complement(3667745..3669919)
Genome browser
AA seq
724 aa
AA seq
DB search
MPKRLLVVESPGKVKKLSQILGSEWIVRASCGHIRELSDEGEDSLGFTLDGSSVQCRYVP
RNQQAKETIAQLKAAVRQVKEVVLATDPDREGETIAWHLKEALGLKQPKRVVYTEITESA
VKSAIANPRQLDLNLVGAGLCRDCLDKLVGYKGSPLVWALNNGAKSVGRVQSATLHLICQ
REREIASFVPQDYWSVWVDYAEGFRAFYKGKVDTPSEAPQEAEVHDDAAVNSTEVTESTR
VLSEAEATRLVEEAKRYPHQVVQYEGKIANRQPPPPFITSTLQQAAGSRLKFAPEKTMQV
AQKLYEAGLITYMRTDSVMLSPEFCASARKWLEQNDPQNVPPSVAKHRSNKTAQEAHEAI
RPTDVFRPSTELRVQLSADEFNLYVLIWKRAIASQCRPAQLRKTLVITQSGQILWQARGQ
VIEFYGYARYWSNLSKDTILPNLQQGQMLTLENAGHEKKKTQPPPRYSEPKLVQLMERKG
IGRPSTYSPTIATLKKRSYVQLTKENLQPTTLGLEVDAFLQKALPDLLQTEFTAKMEDAL
DAIASGKQPWQHYLTNWNQNYFAPALAKAKTVVVNSVVSSSNGAKVSPVAERKYQTSRTR
CPECKNYLAKIPSNKVTKKYFLKCLSGCEDTVLFWSDRTKTWEAPRSQAAKSGNSAKPPV
KVTTYFCPVCKKPLEEYSYTKDGQSKKMLRCSDSKSRNDQKHKDVAYFTTAKGWWSPKFG
ELKC
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaacgccttctagtggtcgaatcccccggtaaagtcaaaaagctcagtcaaatt
ctgggttcggagtggattgttcgtgctagttgcggtcacattcgagaactcagcgatgaa
ggtgaggattcgctgggttttaccctggatggcagtagtgtacaatgtcgctatgtaccc
cgcaaccagcaagcaaaggaaacgatcgctcaacttaaggctgcggttcggcaagtcaag
gaagttgtcttagcgactgatccagatcgggaaggagaaacgatcgcttggcatcttaag
gaagctttgggtttgaagcaaccgaaacgagtcgtctacactgagattactgagtctgcg
gttaaaagtgcgatcgccaatcctagacaacttgacctcaatctggtaggagcaggattg
tgccgcgactgtcttgacaaactcgtcggttacaagggaagcccgcttgtttgggcgttg
aataatggcgcgaagagtgtcggacgcgttcaaagtgcgacgctgcacctgatttgccag
cgcgagagggaaattgcgtcttttgtcccccaagattattggagtgtctgggttgattat
gctgaaggattccgcgctttctacaaaggtaaggtggatacgccgtcagaagcaccacag
gaagctgaagttcatgatgacgcggcagttaacagcacagaagtcaccgaatctactcgc
gttctttcggaagcagaagcaacacgcttagttgaggaagcgaaacgctatcctcaccaa
gttgtccaatacgaggggaaaatcgccaaccgccaaccacctccaccgtttatcacttct
actcttcagcaagctgctggttcgaggttgaaatttgctcctgaaaaaaccatgcaggtg
gctcaaaagttgtatgaggcggggttaattacatatatgcgcacagattcagttatgctg
agtccagagttctgcgcgagtgcccgcaagtggttagagcagaatgatccgcagaatgta
ccgccttctgttgccaaacatcgtagcaataaaacggctcaggaagctcatgaagcaatc
cgaccaacggatgtgtttcgtccttcaactgaattgcgagtacaactttctgcggacgag
tttaacttgtatgtcttgatttggaaacgggcgatcgcctcccaatgtcgcccagcccaa
ctccggaaaactctcgtcatcactcagtctggtcaaattctttggcaagccagaggacaa
gtcatagagttttacggttatgcccggtactggtcgaacctcagcaaggatacaatccta
ccaaacttgcaacaagggcaaatgctgactttggagaatgcaggtcacgagaagaaaaag
acccagccgccaccccgctacagcgaaccaaaactggtacaactgatggagcgtaaaggc
attggtcgtcctagtacttattctcccacaattgcgacgcttaagaaacgaagttatgtc
cagctgacaaaagaaaatctacagccgacaactttagggctagaagttgatgctttttta
cagaaggcattaccagatttgttgcaaacagaatttacggcaaagatggaagatgcctta
gacgcaattgcttcagggaaacagccttggcagcactacctgacaaattggaaccagaat
tattttgcaccagctttggcaaaagcaaaaactgtcgttgtcaactcagttgtcagttca
tcaaatggggcgaaagtatctcctgtagctgaacgcaaatatcagacttccagaactcgt
tgccctgagtgtaagaattacttagcgaaaattcccagcaataaagttacaaagaaatac
tttctcaaatgtcttagtgggtgtgaagataccgtcctgttttggagcgatcgcactaag
acttgggaagcacctcgttctcaagcagccaaatcaggaaattccgcgaagcctccagtc
aaggtaacgacatatttttgtcctgtgtgtaagaaacctctggaagagtacagttatacg
aaagacggacagagtaagaaaatgcttcgctgttccgattctaagtcccgaaatgaccag
aaacataaggatgtcgcttattttaccactgcaaaagggtggtggagtcccaagtttggg
gagttgaagtgttaa
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