Scytonema sp. HK-05: SAMD_33480
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Entry
SAMD_33480 CDS
T09974
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyt03021
]
SAMD_33480
Transcription machinery [BR:
scyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMD_33480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_3
HTH_24
HTH_Crp_2
HTH_8
HTH_23
MarR_2
Sigma70_ECF
HTH_11
HTH_Tnp_4
HTH_Tnp_ISL3
HTH_17
KORA
HTH_10
HTH_AsnC-type
HTH_31
HTH_30
GerE
Xre-like-HTH
LacI
HTH_28
Tri-helical
SpoIIID
HTH_50
Motif
Other DBs
NCBI-ProteinID:
BAY45741
LinkDB
All DBs
Position
complement(3886753..3887568)
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AA seq
271 aa
AA seq
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MFIRPYLAKKCGAMTTTLTNELKHEIWQLLREYQQFRAADVRNQLVKLNFGLVRKEAHYW
TNQCQESYDDLLQVGCLGLILAIERFDISKGHAFSSFAIPYIRGEIQHYLRDKGVTVRIP
RRWLALQQQAILVSRSLREKYNRQPTDSELAAALEISSQEWQEIKLAWANRAPLSLDIPV
QNGDEGGTLLGELVPDNRYRSFQLAQEDRIRLQQALVQLEQRTREVLEFVFLHDLTQKQV
AERLGISVVTVSRRIKKGLGLLKHLMCMAED
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgtttattcgaccttatttggccaagaaatgcggtgctatgacaaccacacttaccaat
gaactcaagcatgagatttggcagctgttgcgagaatatcagcaatttcgcgcagctgat
gttcgcaaccaactagtgaaactgaattttggacttgtgagaaaagaagctcactactgg
accaatcaatgccaagaaagctacgacgacttgctccaggtcggttgtttgggtttgatt
ttagctatagaaagatttgatatttccaaggggcatgcctttagttcctttgccattccc
tatattcgcggtgaaattcaacactaccttcgagataaaggagtcaccgtgcgaattccc
cgacgctggttagcactgcaacagcaagcaatcttggtttcgcgttctttgcgggaaaaa
tacaatcgccaacctactgactctgagttagcagcagcattggaaatttcctcacaagaa
tggcaggaaatcaaattagcatgggctaaccgcgcccctttaagcctcgatatcccagtg
cagaatggagatgaaggcggaactttactgggagaactcgttccggacaaccgctaccgc
agctttcaactggcacaagaagaccgaattcgcctccaacaagcactcgtgcagttagaa
caacgcacccgcgaagtcttagaatttgtgtttttgcatgatttgacgcaaaaacaagtg
gcagaacgccttggtataagtgtagtcacggtttctcgtaggatcaagaaagggctaggc
ttgctgaaacacttaatgtgtatggcagaggattaa
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