Scytonema sp. HK-05: SAMD_41900
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Entry
SAMD_41900 CDS
T09974
Name
(GenBank) hypothetical protein
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMD_41900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyt03021
]
SAMD_41900
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_41900
Enzymes [BR:
scyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMD_41900
Transcription machinery [BR:
scyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMD_41900
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMD_41900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
DUF1246
Motif
Other DBs
NCBI-ProteinID:
BAY46578
LinkDB
All DBs
Position
4847105..4847341
Genome browser
AA seq
78 aa
AA seq
DB search
MLKRSKFETTQSQIMHRAEDLISAASNRYRITVQVANRAKRRRYEDFDNADDMMMKPVLR
AIIEMSDELTQPEIIGEV
NT seq
237 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagcgttctaagttcgagacaactcaatctcagattatgcaccgggctgaggat
ctgattagtgcagcctcaaatcgctaccgcattacagttcaagtggcaaatcgcgctaag
cgtcggcgttatgaagactttgataatgcggatgatatgatgatgaagccagtgctaagg
gcaattatcgagatgtccgatgaactgactcaaccagaaattattggcgaagtctaa
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