Scytonema sp. HK-05: SAMD_42830
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Entry
SAMD_42830 CDS
T09974
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMD_42830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scyt03019
]
SAMD_42830
03016 Transfer RNA biogenesis [BR:
scyt03016
]
SAMD_42830
Enzymes [BR:
scyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SAMD_42830
Messenger RNA biogenesis [BR:
scyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAMD_42830
Transfer RNA biogenesis [BR:
scyt03016
]
Prokaryotic type
tRNA degradation factors
SAMD_42830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
Ribosomal_L22e
aRib
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
BAY46670
LinkDB
All DBs
Position
4934489..4936645
Genome browser
AA seq
718 aa
AA seq
DB search
MGEFEKSISFDGRDIRLKVGHLAPQAGGSVLIESGDTAVLVTATRSEAREGIDFLPLTVD
YEERLYAAGRIPGGIMRREGRPPERAILTSRLIDRPLRPLFPSWLRDDLQVIALTLSMDE
LVPPDVLAVTGASIATLIAKIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLIVAGS
PEGVIMVEAGANQLSERDIIEAIDFGYEAVQDLIKAQQDLLVEMGLEIVVQEPPEVDPTL
ENYIRDRAAEGIKKILSQFDLDKTARDTALDAIKESIQTAIAELPEEDTVRVAASANSKA
VGNTFKELTKKFMRRQIIEDNVRVDGRKLDEVRPVSSQVSVVPKRVHGSGLFNRGLTQVL
TACTLGTPGDAQTLNDDLQQDQHKRYMHHYNFPPFSVGETKPLRAPGRREIGHGALAERA
LLPVLPSREQFPYVIRVVSEVLSSNGSTSMGSVCASTLALMDAGVPISKPVSGAAMGLIK
EGDEVRVLTDIQGIEDFLGDMDFKVAGTDKGITALQMDMKIPGLPLDIISQAVHQAKEAR
LHILEKMLQTIAQPREEMSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIE
DDGTVTISAVDESKAKKARNIIQGMTRKLNEGDVYVGRVTRIIPIGAFVEFLPGKEGMIH
ISQLADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTRLGIHPEQAAAAREAAAVNR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgggagaatttgagaagtcaatatcctttgacggacgggatattcgactgaaagttggt
catctagctccccaggctggtggctcagtgttgatagaatctggggacacagcagtttta
gtgacggctacgcgttcagaagccagagaaggcattgattttcttcccttaacagtagat
tacgaagaaagactgtatgcggcaggtagaattcccggagggatcatgcggcgggaaggt
cgtccgccagaaagagcaattcttaccagccgtctcattgaccgtcccctccgtcctttg
ttcccgtcgtggttgcgagatgacctgcaagtcattgccttgacgttgtcaatggatgaa
ctggtaccacctgatgtgctagcagtgactggtgcttcgatcgccactttgatcgctaag
ataccatttaatggaccaatggcggcagtgcgtgtgggtcttgtgggagatgattttatc
attaaccctacctatgcagaaattgaagcaggagacctggatctgatagttgctggatca
ccagaaggtgtgatcatggtggaagcaggtgccaatcaactgtcagaaagagacattatc
gaagcgattgattttggctacgaagctgtacaggacttaattaaggcgcagcaagatttg
ctcgtagaaatgggtctggaaattgtcgtgcaggagccaccagaggtagacccgacgctg
gaaaattatatacgcgatcgcgctgccgagggaattaagaaaattctgtcgcaatttgat
ctggacaaaacagcacgagatacagctttagatgccataaaggagtcaattcaaacagcg
atcgccgaacttccagaagaagacaccgttcgcgttgccgcatctgcaaacagtaaggct
gttggtaataccttcaaagaacttaccaaaaagttcatgcgccgtcaaatcatcgaagat
aacgttcgcgttgacggtcgcaagcttgatgaagtacgtcccgtatcttctcaagtcagc
gtcgtgcctaagcgagtccacggcagtggtttatttaaccggggactgactcaggtgcta
accgcttgtactctgggcacaccgggagatgcccaaacattaaatgatgacttgcaacag
gatcaacacaagcgctacatgcaccattacaacttcccaccgttctccgtcggggaaacc
aaacccttacgtgcgccaggacgacgggaaatcggtcacggggcgcttgcagaaagagct
ttattacctgtgctaccctcaagagaacagtttccctacgttattcgggtggtatcagaa
gttctttcttccaatggttctacctcaatgggttcggtgtgcgcttccacgctagcgttg
atggatgcaggcgtacccatttccaaacctgtcagcggtgccgcaatgggtttgattaag
gaaggcgacgaagtccgagtcctaactgacattcaggggattgaagactttttgggtgac
atggacttcaaagtcgccgggacggataaagggattaccgccctgcaaatggatatgaaa
attccaggtttgcctttggatattatctcccaagccgtccaccaagctaaagaagcacgg
ttgcacattctggagaaaatgctccagacaattgctcaaccgcgtgaggaaatgtcacct
tatgccccacgtctgttaaccattaagattgattcagacatgattggtctggtcattgga
ccaggtggtaagacgattaagggcatcactgaggaaacaggtgcaaaaattgacatcgaa
gacgatggaacggtgacgatttctgccgtggatgaaagcaaggcgaaaaaagcgcgtaac
atcatccaaggcatgacacgaaagctcaacgaaggtgatgtctacgtaggtcgggtgacg
cgaatcataccgattggtgcgtttgtggaatttttacctggcaaagaagggatgatccac
atttcgcaacttgctgactatcgtgttggcaaagttgaggatgaagtcgcagtcggtgat
gaagtgattgtcaaagtccgcgaaattgacaacaaaggcaggattaatctcacccgccta
ggtattcatccagaacaggcggctgcagcgcgagaagctgcggctgtgaatcggtaa
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