Scytonema sp. HK-05: SAMD_48400
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Entry
SAMD_48400 CDS
T09974
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scyt03016
]
SAMD_48400
Enzymes [BR:
scyt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SAMD_48400
Transfer RNA biogenesis [BR:
scyt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SAMD_48400
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
DNA_pol_B_2
DUF2730
Motif
Other DBs
NCBI-ProteinID:
BAY47223
LinkDB
All DBs
Position
complement(5611724..5612347)
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AA seq
207 aa
AA seq
DB search
MEDFQVCDRDLSDDALSHYLQAEVIAVDTETMGLLPQRDRLCLVQLCNTEGKVTAIRIAK
GQTDAPNLKKLLEAANVLKVFHFARFDIATLRYNLGIHVAPVFCTKIGSKLARTYTQRHG
LKDVVQELEQVELDKSAQSSDWGNAANLSEAQLSYAANDVRYLIGVQQKLAEMLKREERL
ELAQECFRCLPTIVSLDLLQFKDLFEH
NT seq
624 nt
NT seq
+upstream
nt +downstream
nt
atggaagattttcaggtttgcgatcgcgaccttagtgacgatgctttatctcattatcta
caagctgaggtcattgctgtagataccgaaacgatgggattactaccgcagcgcgatcgc
ttgtgtctcgtccagctgtgcaacactgagggcaaagtcactgcaattcgtattgccaaa
ggtcaaactgatgccccaaacttaaaaaaactcttagaagctgcgaatgtcctcaaagtc
tttcactttgcgcgttttgacattgccacgctgcgttacaatttgggcattcacgttgct
cctgttttctgtaccaaaattggcagtaagttagcccgtacctacacccaacgtcacgga
ctcaaagatgtggtgcaggaattggaacaagtggaactcgataaaagcgctcaaagttct
gactggggtaacgctgctaatttatccgaggcacaactcagttacgccgccaacgatgtg
cgctatctcattggtgtacagcagaaactcgcagaaatgctcaaacgggaagaacgctta
gaacttgctcaagaatgctttcggtgtttaccaacgatagtttccttggatttgttgcaa
ttcaaagacttgtttgaacattaa
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