Scytonema sp. HK-05: SAMD_65410
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Entry
SAMD_65410 CDS
T09974
Name
(GenBank) pseudouridine synthase
KO
K06177
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:
5.4.99.28
5.4.99.29
]
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scyt03009
]
SAMD_65410
03016 Transfer RNA biogenesis [BR:
scyt03016
]
SAMD_65410
Enzymes [BR:
scyt01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
SAMD_65410
5.4.99.29 23S rRNA pseudouridine746 synthase
SAMD_65410
Ribosome biogenesis [BR:
scyt03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SAMD_65410
Transfer RNA biogenesis [BR:
scyt03016
]
Prokaryotic type
tRNA modification factors
Psudouridine synthases
SAMD_65410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
BAY48912
LinkDB
All DBs
Position
complement(7619584..7621335)
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AA seq
583 aa
AA seq
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MVVLHSLSDFINCNSAVSDLSVSYWYEGRCPQTSELLRLPRTPMSEAIAHALMQHLATDD
RYSSEGKMYGVLLVELPTGEQRVLKAFSGLLNGDSVAEGWVPPIPGRDEVALEEIRTLAQ
LDAIKQELITLKQLPQRQQYETLRSEFELRLQQMSDRHRDCKNQRHEKRQICYEKLIGEA
LIVALEQLDEESRQHGIQRRQLKRQRDEVLQPLQHLIAAADARMGELKQRRKELSRQLQA
QMHATYTLMNFLGQSLSLQQLIPEGMPTGTGDCCAPKLLHYAATHSLKPLAMAEFWWGKS
SCNQDKVQGEFYGACAERCQPLMGFLLSGLRPNPPTPFPRREGGVLSLSSPPPNPLLQGG
GQGAAFVAKGVWGEVIPILYEDEWLIAVNKPAGLLSVPGRYRDTQDSVLSRLRQLSPDGM
EIIAVHRLDQETSGILLLARDRHTYRQLSEQFQKRQVHKVYEAVLSGSLTTDKGVIELPL
WGDPQNRPYQQVNLQYGKPSVTHFQVIATEGNNTRVEFMPRTGRTHQLRVHAADARGLGI
PILGDRLYGCHAIASRLHLHARELSFEHPQLGETLHLQVKTPF
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggtagttctgcactcgctttcagatttcataaactgcaattctgctgtcagcgactta
tctgttagctattggtatgaagggcgttgtcctcaaactagtgaactcctgagactaccc
cgcaccccaatgtctgaggcgatcgcccatgctttaatgcaacatcttgccacggatgac
cgttattcctctgaaggcaaaatgtatggagtattactagtggaactgcctactggcgaa
caacgggtactcaaagctttctccgggctactgaatggtgacagcgtggctgagggctgg
gtaccgcccattccaggacgagacgaagtggcattagaggaaatccgcactttggcgcaa
ttggacgctatcaagcaggaactgattaccctcaagcaacttccacaaaggcagcaatac
gaaacgcttaggagtgagtttgagttacgcctgcaacaaatgagcgatcgccatcgagat
tgcaaaaaccaacgacacgaaaaacgtcagatatgctacgaaaagctaattggagaagcg
ctcatagttgcgttggaacaactcgacgaagaaagtcgtcagcatggaattcagcgacgg
caacttaaacgccaacgggatgaagtcttgcagccgcttcagcacctcattgcagcagca
gatgcccggatgggtgaactgaaacagagacgtaaagaactgtcccgccaactccaggca
cagatgcacgctacttacaccctgatgaattttttaggacaatctttatcgttgcagcag
ttgataccagaaggtatgcccacaggaacaggagactgttgtgcgccaaagctgctgcat
tatgcggcaacacatagtctaaaaccattggcaatggcagagttttggtggggaaagtcg
tcctgcaatcaggacaaagtccagggagaattctatggagcttgtgcagaacgctgtcag
ccattaatggggtttctgctgtcaggattgagacctaacccccctacccccttccctcgt
agggaagggggagttttaagcctctcctcacctccccctaaccccctcctacaaggaggg
ggacaaggagcagcttttgttgctaaaggggtttggggagaggtaatacctattctttat
gaagacgaatggttgattgctgtcaacaaacccgcagggctactttcagtacctggtcgt
tatcgcgacacccaagatagtgtcctcagtcgtttgcgtcaactgtcaccagatgggatg
gagattattgcggtgcatcgtttggatcaggaaacatctggtattcttctgttggctcgt
gacaggcatacctatcgtcaactcagtgagcagtttcaaaaacggcaggttcacaaagtg
tatgaagcggtactttccggttctctaaccactgacaaaggtgtgattgaactgccactg
tggggagatcctcagaatcgcccttatcagcaagtcaatttgcaatatgggaaacccagc
gtaactcacttccaggtgatagcaacagaaggaaacaacactcgtgtagagtttatgccg
cgaacaggacgcacccatcaattgagagttcatgctgctgatgcaagaggacttggtata
cctattttgggcgatcgcctttatggatgtcatgcaattgcaagtcggttacatctgcat
gcaagggaactttcttttgagcatccacagttaggagaaacccttcatttacaggtaaaa
acaccattttga
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