Scytonema sp. HK-05: SAMD_75670
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Entry
SAMD_75670 CDS
T09974
Name
(GenBank) putative DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyt03032
]
SAMD_75670
03400 DNA repair and recombination proteins [BR:
scyt03400
]
SAMD_75670
Enzymes [BR:
scyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SAMD_75670
DNA replication proteins [BR:
scyt03032
]
Prokaryotic type
DNA Topoisomerases
SAMD_75670
DNA repair and recombination proteins [BR:
scyt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SAMD_75670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
PMEI
Motif
Other DBs
NCBI-ProteinID:
BAY49938
LinkDB
All DBs
Position
complement(8811824..8812927)
Genome browser
AA seq
367 aa
AA seq
DB search
MQTLQKELIKKEVEAALQIDPVKSAKIVGLRYISDTIPGIQRQRVDEEFCYIDADGKEIC
DEEELNRFKSLVIPPAWTEVWICPLAHGHLQATGRDAKGRKQYRYHQHWRQVRSQTKFNR
MIAFGEALPSIRKRVEEDMALTGIPKQKVLATVVKLLEITKIRVGNEEYAQTNKSFGLTT
MRDRHVDVSGSKIRFKFRGKSGVAHDIELSDRRLAKIVKSCQDIPGQELFQYLDEEGHRQ
PIGSDDVNNYLREMTGLDFTAKDFRTWGGTVLAAQELCEIGRFESQTQAKKNVTEAIKNV
AEHLGNRPATCRKYYVHPAVLDAYMDDSLFEFMEASNQKTASSDSLRPEEAAVLKLIEQH
LLEESKK
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgcttcaaaaggaattaatcaaaaaggaagttgaagctgcactccagatcgat
cctgttaaatcagcaaagatagtcggattgcgctacataagcgataccattccaggaatt
cagcgtcagcgtgttgatgaggaattttgctacattgatgcagatggcaaagaaatctgt
gatgaggaggaattgaaccgctttaagtctcttgttattccgcctgcttggactgaagtc
tggatttgtccattagcacatggacatttacaagcaacgggacgcgatgctaaaggacgc
aagcagtaccgttatcatcaacattggcgacaggtacgctctcaaacgaagtttaacagg
atgatagcctttggggaagcactgccaagtatccgcaagcgagttgaagaggatatggcg
cttacaggtataccaaaacaaaaggtgctggcgactgtggtgaaactcttggaaattacc
aaaattcgtgtgggaaatgaagagtatgcccaaacgaataaatcctttggcttaacaacg
atgcgcgatcgccacgttgatgtatccggttccaaaattcggtttaaattccggggaaaa
agtggcgtggctcatgacattgaattgagcgatcgccgtttggcaaaaattgtcaaaagc
tgtcaagatatccccggacaagaattatttcagtatctagacgaagaaggacaccgtcaa
cctatcggttctgacgatgtcaacaattacctgcgtgagatgactggtttagactttact
gctaaagattttcgtacctggggtggtactgttttggcagcacaagaattatgtgaaatc
gggcgatttgaatcgcaaacacaggcaaagaaaaatgtaactgaggctatcaaaaacgta
gccgaacaccttggcaatcgtccagcgacttgccgtaaatattatgtccatcctgcggtt
ctcgatgcctatatggatgactcattatttgagtttatggaagcatcgaatcaaaaaaca
gcttcatcagactctctgcgtccagaagaagcagcggttcttaaacttatcgaacagcat
ctgttggaagagagcaaaaaatag
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