Scytonema sp. HK-05: SAMD_78010
Help
Entry
SAMD_78010 CDS
T09974
Name
(GenBank) FliA/WhiG subfamily RNA polymerase sigma 28 subunit
KO
K03090
RNA polymerase sigma-B factor
Organism
scyt
Scytonema sp. HK-05
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scyt03021
]
SAMD_78010
Transcription machinery [BR:
scyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMD_78010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
DGKD_4H
Motif
Other DBs
NCBI-ProteinID:
BAY50172
LinkDB
All DBs
Position
plasmid1:339275..339994
Genome browser
AA seq
239 aa
AA seq
DB search
MVTEKSRTKVSPATELQRRNQIAQTHSKLVHKIVHRWVNKCNESYEDLYQIGFLGLLKAV
ERFESELGHAFSSFAVPYIQGEIQHYLRDNASQLKIPRSSIEKLSKIRRLRKQFIALGRQ
INEVDVAAKLGISAQEWESLKLTVSRRLTVSWDDLPYEPQVEDSEAITQEELTQLLYEAI
SKLHPKHRLVVRERYLLNKEVVEVAKALKISTLETQALIQEAIFILNSSLTAHYGSSFA
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atggttacagaaaaaagcagaactaaagttagtcccgcgactgaacttcaaagacgtaat
cagattgcccaaacgcatagcaaattagttcataaaattgtgcatcgttgggtgaataaa
tgtaacgaaagttacgaagacttatatcaaatagggtttcttggacttcttaaagccgtt
gagcgttttgagtccgaacttggacatgcttttagttcttttgctgttccttatatccaa
ggtgagattcagcactatttgcgggataatgcatcacagttaaaaattcctcgttcttca
atagaaaagctaagtaagattaggcggttaagaaagcaatttattgctttaggaagacag
attaatgaagtggatgtagctgctaagctcggtattagcgcccaagagtgggaatcttta
aagcttaccgtttcgcggcgcttaactgtgagctgggatgacttaccttatgagcctcag
gttgaagactcggaagcaataacccaagaagaattaactcaattgctttatgaggcaatc
tcaaaacttcatcccaagcataggcttgtggttcgagagcggtatcttctgaataaagaa
gtagttgaagtagctaaagcgttaaaaatttcaaccttagaaactcaggcattaatacaa
gaagcaatttttattttgaactcatcattaactgcgcattatggaagttcatttgcttga
DBGET
integrated database retrieval system
