Streptomyces sp. CFMR 7: ABE83_25120
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Entry
ABE83_25120 CDS
T04074
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
scz
Streptomyces sp. CFMR 7
Pathway
scz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABE83_25120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scz03019
]
ABE83_25120
03009 Ribosome biogenesis [BR:
scz03009
]
ABE83_25120
Enzymes [BR:
scz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABE83_25120
Messenger RNA biogenesis [BR:
scz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABE83_25120
Ribosome biogenesis [BR:
scz03009
]
Prokaryotic type
rRNA processing factors
ABE83_25120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ALC29968
UniProt:
A0A0M5IXB2
LinkDB
All DBs
Position
6009514..6013692
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AA seq
1392 aa
AA seq
DB search
MPQSNEPAANGNNEENTPGDKLPPRRRRRAASRPAGPPGGAVTPAAEETAAPAAEAAAVE
TPAAAPEETAPPARTRRRAVRKATAPAGAPVTAEAAEPVAAEPVAAEAPAAEEPAAEPAA
EEAPAPRTRRRAVRKATAPAGAPQAAATVEAVAVVETPAEPLAEDEEDEEPVAVEAEAAP
EPAAPRRRRASRKATAPAGAPQAAEAAVIVEPTAPAEPVAEAAAVASEPAAPAAEAPRGR
TRRRASAPAGAPQAVTAPEAVAEPAAETPAAEAPAEEAPAPRGRRRAVRKATAPAGAPAA
EETAAAEEPVETGESLPAAVAEELAAEVDEVEEAAPRGRQRRRATAAAGRPEFTAKAEEP
SRKGRRATRPAVAVFQAPVFAEPMFQTPETAAAAAAAAGSSSPYDDVDETEDEQSTQAAQ
VSAPAEAAPQGGSRRRRRRRGEAAEAEQAAAPAAPVEEPADEAPEAEADEHEGDENDEYG
DRPSRRRRRGGRRRRRGEAHDTDEAEQHAEEAPAPARADESRTEDEQPQAQEADDEEEGD
SDSTASGSSSSRRRRRRRRRSGDAAPESDNGTDDPERTVVKVREPRKKEEREPGTGFDEV
QSIKGSTRMEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVL
EDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALG
MAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKL
PDTERSRLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAKGTSGS
NAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRWTSE
VDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEETVTR
NNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTS
LGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSVGGGGGKKSRKRGRGGAGHD
HEHEDHTAVEPVETEAELAAEVAAPVAVEPEVTADEEFYSSPAEAEAAASRRGRRRASRK
ASAPAGAPRTEAPAPVAETVVEESAPAVEPVAEPEAVAEPAAAAEPAVVVPEPEAAEPEA
APQGRTRRRATRKASAPAGSPKQAEPAEPVQPAEPTADPVAAEDPVVEAAAEPAPVAEAP
EAEAPKEAAPPRARRRVTRKVTAPAGSPTGAEEAAVVVVESAPEAKAPETAPETAPEADG
SDEPAPAKKTARKAAAKKAPAKKAAAKKTAAKKTAAKKTTAKTAAKKTTKKTVAAEQSSS
AVTASAPSTDGE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagtcgaacgagcccgctgccaacgggaacaacgaagagaacacccccggggac
aagctgccgccgcgccgcaggcgccgcgccgcttcccgccccgccggcccgcccggcggc
gccgtgaccccggcagccgaggagaccgccgcaccggccgccgaggccgccgccgtggag
accccggccgccgcacccgaggagaccgccccgcccgcccgtacgcgccgccgcgccgtg
cgcaaggccaccgcgcccgcaggcgccccggtgacggccgaggcggccgagccggtcgcc
gccgagccggtcgctgccgaggccccggctgccgaggagcccgctgcggagcccgccgcc
gaggaggccccggcgccgcgcacccgccgccgtgcggtccgtaaggccaccgctccggcc
ggtgccccgcaggccgccgcgaccgtggaggccgtggcggtcgtcgagaccccggccgag
ccgctcgcggaggacgaggaggacgaggagccggtggccgtcgaggccgaggccgccccg
gagcccgccgccccgcgccgccgccgcgcctcccgcaaggccaccgcgcccgccggggcc
ccgcaggctgccgaggccgccgtgatcgtcgagccgaccgctcccgccgagccggtggcc
gaggccgccgccgtggcctccgagcccgctgcgcccgccgccgaggccccgcgcggccgt
acccgccgccgcgcctccgccccggccggtgcgccgcaggccgtcaccgccccggaagcg
gtggccgagcctgccgccgagaccccggccgctgaagcgcccgccgaggaggccccggcg
ccgcgcggccgccgccgtgcggtccgtaaggccaccgcgcccgccggtgcccccgccgcc
gaggagaccgcggccgccgaggagcccgtcgagaccggcgagagcctgcccgccgccgtg
gccgaggagctggccgccgaggtggacgaggtcgaggaggccgccccgcgcggccgccag
cgccgccgggccaccgccgccgccggacgccccgagttcaccgccaaggcggaggagccg
agccgcaagggccgccgcgccacgcgccccgccgtcgccgtgttccaggccccggtcttc
gccgagccgatgttccagacccccgagacggcggccgccgccgctgccgcggccggttcc
tcctccccgtacgacgacgtcgacgagaccgaggacgagcagagcacccaggccgcacag
gtctccgcccccgccgaggccgcgccgcagggcggctcgcgccgccgtcgccgccgccgt
ggtgaggccgccgaggccgagcaggccgccgcgcccgccgccccggtggaggagcccgcc
gacgaggcccccgaggccgaggcggacgagcacgagggcgacgagaacgacgagtacggc
gaccgcccctcgcgccgccgccgccgtggtggccgtcgccgccgccgtggcgaggcccac
gacacggacgaggccgagcagcacgccgaggaggcgcccgccccggcccgcgccgacgag
agccgtaccgaggacgagcagccccaggcccaggaggccgacgacgaggaggagggcgac
agcgactccaccgcctccggttcgagcagcagccgccgtcggcgccgtcgccgtcgccgc
agcggtgacgccgcccccgagagcgacaacggcaccgacgacccggagcgtacggtcgtc
aaggtccgcgagccccgcaagaaggaggagcgcgagccgggcaccggcttcgacgaggtc
cagtccatcaagggctcgacccgcatggaggccaagaagcagcgccgccgcgagggccgc
gagcagggccgccgccgcgtcccgatcatcaccgaggccgagttcctggcccgccgcgag
gccgtcgagcgcgtgatggtcgtccgccagagcggcgagcgcacccagatcggcgtcctc
gaggacaacgtgctcgtcgagcactacgtcaacaaggagcaggccaccagctacgtcggc
aacgtctacctgggcaaggtgcagaacgtcctgccctccatggaggccgccttcgtcgac
atcggcaagggccgcaacgccgtcctgtacgccggtgaggtcaacttcgaggcgctcggc
atggcccacgggccgcgccgcatcgagaccgcgctcaagtccggccagtcggtcctggtc
caggtgaccaaggacccgatcggccacaagggcgcgcgtctgacgagccaggtctcgctg
cccggccgctacctcgtctacgtgcccgagggctcgatgaccgggatcagccgcaagctc
cccgacaccgagcgctcccgcctcaagaccatcctcaagaagatcgttcccgaggacgcg
ggcgtcatcgtgcgcaccgccgccgagggcgccagcgaggacgagctgcgccgcgacgtc
gagcggctccagcagcagtgggaggacatccagaagaaggcgaagggcaccagcggctcc
aacgcgccgacgctgctctacggcgagccggacatgaccgtccgggtcgtccgcgacatc
ttcaacgaggacttctccaaggtcatcgtcagcggtgacgacgcctgggagaccatccac
gggtacgtctcgcacgtggcgcccgacctcaccgagcggctctcgcgctggacctccgag
gtcgacgtcttcgccacgtaccgcatcgacgagcagctgatgaaggcgctggaccgcaag
gtctacctgcccagcggcggttcgctggtgatcgacaagaccgaggcgatggtcgtcgtc
gacgtcaacaccggcaagttcaccggccagggcggcaacctggaggagaccgtcaccagg
aacaacctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggc
atcgtcgtcgtcgacttcatcgacatggtgctggagtccaaccgggacctggtgctgcgg
cgactcctggagtgcctgggccgcgaccgcaccaagcaccaggtggccgaggtcacctcg
ctgggcctggtccagatgacccgcaagcgggtgggccaggggctgctggagtccttctcc
gagacctgcgtccactgcaacgggcgcggggtcatcgtccacatggagcagccgacgtcc
gtcggtggcggcgggggcaagaagtcccgcaagcgcggccgcggcggcgcgggccacgac
cacgagcacgaggaccacacggccgtcgagcccgtggagacggaggccgagctggccgcc
gaggtcgccgccccggtggcggtggagcccgaggtcaccgccgacgaggagttctacagc
agccccgccgaggccgaggcggccgcctcgcgccgtggccgccgccgggcgtcccgcaag
gcgtcggccccggccggtgctccgaggaccgaggcgcccgccccggtggcggagaccgtc
gtcgaggagtcggctccggccgtggagcccgtggccgagcccgaggccgttgccgagccc
gcagccgccgccgagcccgcggtcgtcgtgcccgagccggaggccgcggagcccgaggcc
gcgccccagggccgtacgcgccgtcgcgccacccgtaaggcgtccgccccggccggctcg
cccaagcaggccgagccggcggagccggtgcagcccgccgagcccaccgcggacccggtc
gcggccgaggacccggtcgtcgaggcggccgccgagcccgctcccgtggcggaggctccc
gaggcggaggcgcccaaggaggccgcaccgccgcgggcccgtcgccgggtgacccgtaag
gtcaccgccccggcgggttcgcccaccggcgcggaggaggcggcggtcgtcgtcgtggag
tcggcacccgaggccaaggccccggagaccgctccggagaccgcccccgaggccgacggg
tccgacgagcccgccccggcgaagaagacggcccgcaaggccgccgccaagaaggctccg
gcgaagaaggcggcggccaagaagacggccgccaagaagaccgccgcgaagaagacgacg
gcgaagaccgctgcgaagaagacgacgaagaagaccgtcgccgccgagcagtcgtcctcc
gccgtcaccgcttcggccccgtccaccgacggcgaataa
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