KEGG   Streptococcus dysgalactiae subsp. equisimilis RE378: GGS_0123
Entry
GGS_0123          CDS       T02269                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sda  Streptococcus dysgalactiae subsp. equisimilis RE378
Pathway
sda03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GGS_0123 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sda03021]
    GGS_0123 (rpoC)
   03400 DNA repair and recombination proteins [BR:sda03400]
    GGS_0123 (rpoC)
Enzymes [BR:sda01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GGS_0123 (rpoC)
Transcription machinery [BR:sda03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GGS_0123 (rpoC)
DNA repair and recombination proteins [BR:sda03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GGS_0123 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_2 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: BAM60298
LinkDB
Position
109778..113419
AA seq 1213 aa
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPMDTPLEPKSLLTEREYREKLQEYGHGSFIAKMGAEAIQDLL
KRVDLAAEIAELKEELKSASGQKRIKAVRRLDVLDAFHKSGNKPEWMVMNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVAKEYAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMIFKDKDEAVMAYRNGYAHLHSRVGI
AVDSMPNKPWKDSQRHKIMVTTVGKILFNDIMPEDLPYLQEPNNANLTEGTPDKYFLEPG
QDIQEVIDGLDINVPFKKKNLGNIIAETFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKAEIIDAAHHRVEEINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETL
EERLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSVFTCATRHGVC
RHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVEVGDE
VNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRVMDPGDTDLLPGTLMDISDFTDANKDIVISGGIPATSRPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNIEPQAINDVEVIDKP
EVSEETVAATETE
NT seq 3642 nt   +upstreamnt  +downstreamnt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcctcaccaagtaaggtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactaccgtacactgaaa
ccagaacgtgaaggactctttgacgaagtcatctttggtccaacaaaagactgggaatgt
gcgtgtgggaaatacaaacgtatccgttataaaggaatcgtgtgtgaccgctgtggggtt
gaggtaactcgtgccaaagtacgtcgtgaacgtatggggcatatcgagttaaaagctcct
gtatcacacatctggtacttcaaagggattccatcacgtatgggattgactcttgacatg
agccctcgtgcccttgaagaagttatttattttgcggcttatgtggtcattgacccaatg
gatactccgcttgaaccaaaatcattattaacagaacgcgaataccgtgaaaaacttcag
gagtatggacacggatcattcattgctaagatgggtgctgaagccattcaagatctcttg
aaacgtgttgatttggcagctgaaatcgctgaattaaaagaagaattgaaatctgcttct
ggtcaaaaacggattaaggcagttcgtcgtttggacgtgcttgatgccttccacaaatct
ggaaataaaccagaatggatggttatgaacatcttgccagttattccgccagatcttcgt
ccgatggttcaattggatggtggccgttttgcggcatcagatttgaatgacttgtaccgt
cgtgtcattaaccgtaacaaccgtttggcacgtttgttagaacttaatgccccaggtatt
attgttcaaaatgaaaagcggatgcttcaagaggcggtagatgcgctgattgataacggt
cgtcgtggtcgtccaattactggaccaggtagtcgtccattgaaatcattgagccacatg
cttaaaggtaaacaagggcgttttcgtcaaaacttacttggtaaacgtgtagacttctct
ggacgttccgttatcgctgttggtccgacccttaaaatgtaccaatgtggtgtcccacgt
gaaatggctatcgaactctttaaaccatttgtaatgcgcgagattgttgccaaagaatat
gctggtaacgttaaagccgctaaacgtatggttgaacgtggagacgaacgcatctgggat
atcttagaagaagttatcaaagaacacccagttcttcttaaccgtgcaccgaccctccac
agacttggtattcaagcttttgaacccgttctgattgacggtaaggcacttcgtcttcac
ccacttgtgtgtgaggcctacaatgccgacttcgatggagaccaaatggccatccacgtg
ccactttcagaagaagcacaagctgaagctcgtcttttgatgcttgctgcagagcacatc
ttgaaccctaaagatggcaaaccagttgttactccatctcaggatatggttcttggtaac
tactatcttacgatggaagatgctggtcgcgaaggcgaaggcatgatcttcaaggataaa
gacgaagctgtgatggcatatcgtaatggttatgctcacttgcatagtcgtgtgggtatc
gctgttgacagcatgccaaacaaaccttggaaagatagccaaagacataaaatcatggtg
acaactgttggtaagattttgtttaacgacatcatgccagaggaccttccttaccttcaa
gagccaaacaatgccaacttgacagaaggaacacctgataaatacttccttgaacctggt
caagacatccaagaagtgattgacggcttagacatcaatgtgccatttaagaagaaaaac
cttggtaacatcattgcggaaaccttcaaacgtttccgtacaacagaaacatcagccttc
cttgaccgtttgaaagaccttggttactaccattcaacccttgctggtttgacagtgggt
atcgctgacattcctgttattgataataaagctgaaatcattgatgctgctcaccatcgt
gttgaagaaattaacaaagccttccgtcgtggtttgatgacagatgatgaccgttatgtt
gccgttacaacaacatggcgtgaagctaaagaagcccttgaaaaacgtctgattgaaaca
caagatcctaagaacccaatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctcacagcttgcgggtatgcgtggtttgatggctgctcccaacggacgcatcatg
gaacttcctatcttgtcaaacttccgtgaaggtttgagcgttttggaaatgttcttctca
acccacggtgcacgtaaagggatgaccgatacggcccttaaaacagccgactcaggttac
cttactcgtcgtttggttgacgttgcccaagatgttatcattcgtgaggacgattgtggc
actgaccgtggtcttcttatccgtgctattaccgatggtaaagaggttaccgaaactctt
gaagagcgtcttcaaggtcgttacacacgtaaatcagtcaaacaccctgaaactggtgaa
gtcttgattggtgctgaccaattaatcactgaagacatggcacgtaagattgttgatgcg
ggtgttgaagaagtgaccattcgttctgtctttacctgtgcgactcgtcatggtgtctgc
cgtcactgttatggtatcaaccttgcaactggtgatgctgttgaagttggtgaagcagtt
ggtaccatcgctgcgcaatctatcggtgagcctggtactcagcttaccatgcgtaccttc
cacacgggtggtgtagcctcaaataccgatatcacacagggtcttcctcgtattcaagaa
atctttgaagcacgtaaccctaaaggggaagcggtcattactgaagtgaaaggtaatgtc
gtcgagattgaagaagatgcgtcaactcgtaccaagaaagtctacgttcaaggtaaaact
ggtatgggtgaatacgtcgtaccatttacagcacgtatgaaagttgaagttggcgacgaa
gttaatcgcggagctgcccttacagaagggtcaattcaaccgaaacgtctccttgaagtg
cgtgataccttgtcagttgaaacgtaccttcttgcagaagtacaaaaagtttaccgtagc
caaggggtagaaatcggagacaaacacgttgaggtaatggttcgccaaatgcttcgtaaa
gttcgtgtcatggatccaggtgatacagacctccttccaggtacacttatggatatttct
gatttcacagatgctaacaaagatattgttatctctggtggtattcctgcgacatctcgt
cctgttcttatgggtattactaaggcttcccttgaaaccaattccttcttatcagctgca
tccttccaagaaacaactcgtgttcttacagatgctgctatccgtggtaagaaagaccac
ttacttggtcttaaagaaaatgttatcattggtaaaatcattccagctggtactggtatg
gcgcgctaccgtaacattgaaccacaagcaatcaatgatgttgaagttattgacaagcca
gaagtttctgaagaaacagttgctgcaactgaaacagaataa

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