Streptococcus dysgalactiae subsp. equisimilis RE378: GGS_0511
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Entry
GGS_0511 CDS
T02269
Symbol
rnr
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sda
Streptococcus dysgalactiae subsp. equisimilis RE378
Pathway
sda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GGS_0511 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sda03019
]
GGS_0511 (rnr)
03016 Transfer RNA biogenesis [BR:
sda03016
]
GGS_0511 (rnr)
Enzymes [BR:
sda01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GGS_0511 (rnr)
Messenger RNA biogenesis [BR:
sda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GGS_0511 (rnr)
Transfer RNA biogenesis [BR:
sda03016
]
Prokaryotic type
tRNA degradation factors
GGS_0511 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BAM60667
LinkDB
All DBs
Position
520813..523143
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AA seq
776 aa
AA seq
DB search
MKERIMTYLKEHGKSNVNDLAAALEMAGAKHFPSLIKTISKMESQGLLRFSNDGSLALRK
EREKKKEATVQGIFRANKAGFGFLSVDENEDDMFIGRNDVGYAIDGDIVEATIKKPADRL
KGTAAEAKVVAIVERSLKTAVGTFILDDDKPKYAGYIRSKNQKIQQKIYIKKEPVVLKGT
EIIKVDIDKYPTRGHDYFVASVRDIVGHQGDVGIDVLEVLESMDIVSEFPAEVLAEANAI
SEAPTAKDLIGRVDLRQETTITIDGADAKDLDDAIHIKLLDNGNYELGVHIADVSYYVTE
GSALDKEAVRRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSALMEINSQGHVVNY
QICQSVIKTTYRMTYSTVNDMIAGDEEALQEFASIADDVTLMVALHRILEAMRSKRGALN
FDTQEAKIIVNDKGMPVDVVLRQRGIAERMIESFMLAANECVAEHFATAKLPFIYRIHEE
PKAEKLQKFMDYASIFGIQIQGTANKISQEALQAFMARVEGQPGAEVLNMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIREYNQPSQEKRDHFAQIIPELATSS
SQLERRAIDAERVVEAMKKAEYMAEYVGEEFDGIVASVVKFGLFVELPNTIEGLVHITSL
PEYYHFNERTLSLQGEKSGKVFKVGQPIRVKLVKADKETGDIDFEYLPSDFDVVEKIKMS
DKASRRDRRKSSKSSKGTKKKEPKEVAKAKTKGKTKKGSKKPFYKEQAKKKSRKRS
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaagaattatgacttacctcaaggagcatggcaagtccaacgtgaacgacttg
gctgctgccttagagatggctggagctaaacactttcccagtctcattaaaaccatttcc
aaaatggaaagtcaagggcttttacggttttcaaatgatggtagcttagcacttagaaaa
gagcgagaaaagaagaaagaggctactgttcaggggattttccgtgctaacaaagcaggt
tttggtttcttgtccgtggatgagaatgaagacgatatgtttatcggccgtaatgacgtt
ggttacgccattgatggcgatatcgtagaagcaactattaaaaaaccagcagaccgtctc
aaagggactgcggctgaagctaaagtggtagctattgtagaacgctcattaaaaacggct
gttggaacttttattttagatgatgacaaaccaaaatatgctggttatatcaggtccaaa
aaccaaaaaattcaacaaaaaatctacattaagaaagaacctgttgtgcttaaaggcact
gaaatcatcaaggttgatattgataaataccccacaaggggacacgattattttgtagcc
agtgtgcgtgatatcgtaggccatcaaggagacgttggaattgatgtcctagaagtcctt
gaatcgatggatatcgtgtcagagttcccagcagaagttttagccgaggccaatgctatt
tcagaagcaccaactgctaaagatttaataggccgtgtggatttgcgtcaagaaaccacc
attactattgatggtgcggacgccaaagacttagatgatgctatccatattaagctattg
gataacgggaattatgaacttggggtacatattgcggatgtctcatattatgtgacagaa
ggatctgcccttgataaggaagctgttaggcgtggtacctctgtctatgtcaccgatcgt
gtggttccgatgttaccagagcgtttgtcaaatggcatctgctctttgaaccctaacgtt
gatcgtttgacccagtcagccttgatggaaattaattctcaagggcatgtggtcaattat
caaatctgtcaatcagtgattaagacaacttaccgaatgacgtatagtacggtcaatgac
atgattgcaggagatgaagaagcgctccaagagtttgctagtattgctgatgatgtgacc
ctcatggtggctttgcataggattttggaagctatgcggtcaaaacgaggcgccttgaat
tttgatacgcaagaagcaaaaattattgtcaatgataaaggaatgccggttgatgtggtg
cttcgtcaaaggggcattgcggagcggatgattgaatcctttatgctagcagccaatgag
tgtgttgcggagcattttgcaacagctaagttaccatttatctaccgtattcacgaagaa
ccaaaggccgaaaaacttcaaaaatttatggattacgctagcatattcggtattcaaatt
caaggaacagccaacaagatttctcaggaagccttgcaagcctttatggcaagagtcgaa
ggtcaaccaggagcagaagtgcttaacatgatgctcttacgctctatgcaacaggcaaga
tattctgaacataatcatgggcattacggtttggccgcagaatattacacccacttcacc
agtccgatccgtcgctatcctgacttattggtgcatcgcatgattcgtgagtacaatcag
cctagtcaagaaaaacgtgatcattttgctcagatcattccagaattagcaacatcttct
tcacagttagagcgtcgtgctattgatgctgaacgcgtggttgaagccatgaaaaaagct
gagtatatggcagagtatgtgggtgaagaatttgacggtatcgtggcaagcgtagttaaa
tttggtctctttgtagagctaccaaatacgattgaaggtttggttcacatcactagctta
ccggaatactatcactttaacgagagaacgctaagtcttcaaggtgaaaaatcaggtaaa
gtctttaaagttggtcaacctattcgtgtgaaattggttaaggctgacaaggaaactggc
gacattgactttgagtatttaccgagcgactttgatgtggttgaaaaaatcaagatgtcg
gataaagctagtcgacgagatcgccgtaaatcctcaaaatcatctaaagggacaaagaaa
aaagaacctaaagaagtagctaaggcaaaaaccaagggtaaaactaaaaaagggtctaaa
aaaccattttacaaagaacaagcaaaaaagaagagtcgtaaaaggagttaa
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