Staphylococcus debuckii: CNQ82_05295
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Entry
CNQ82_05295 CDS
T07127
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sdb
Staphylococcus debuckii
Pathway
sdb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNQ82_05295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdb03019
]
CNQ82_05295
Messenger RNA biogenesis [BR:
sdb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CNQ82_05295
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AYU54875
LinkDB
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Position
complement(1137275..1139206)
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AA seq
643 aa
AA seq
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MKQLKNNEVGVYALGGLGEVGKNTYAVEYKDEIVLIDAGIKFPDDNLLGIDYVIPDYSYL
VQNKDKIIGLFITHGHEDHIGGVPFLLKELNIPIYGGPLALGLIRNKLEEHHLLRTAELH
EINEDTEIDSKYFNISFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDFTPVGTPANIAK
MAKIGEEGVLCLLSDSTNALVPNFTLSEREVGQNVDKIFRKCTGRIIFATFASNIYRVQQ
AVEAAIKYNRKIVVFGRSMENNIKIGMELGYIKAPPETFIEPSKINSVPKHELLILCTGS
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYRAGADVIHSKI
SNIHTSGHGSQGDQQLMLRLIQPKFFMPIHGEYRMLKAHSQTGIQCGVDEDNVFIFDNGD
VLALTRDSARKAGRIPSGDVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNTL
LSGPDIISRGFVYMRESGHLIYDAQRRIKTDVISKLNQNKDIQWHQIKSSIIETLQPYLY
EKTARKPMILPVIMKVNEDGEQITKPSKSKSNSRPKKNNSKVKSSNKNNDSKNNQGGRPA
KRNTNGRKPQSKNNKPQAKNESGSKQEPSSQAKSKNKSDSNKE
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaattaaaaaataatgaggtcggcgtatacgcgcttggcggacttggtgaagtc
ggcaagaatacgtatgcagtcgaatataaagatgagattgtcttgattgatgcagggatt
aaatttcctgatgacaatttattggggattgactatgtcatccctgattattcttatctt
gtacaaaacaaagataagattatcggacttttcatcacacatggacatgaagaccatatc
ggcggtgtgcccttcttacttaaagaacttaatataccgatttatggtggccctttagca
cttggattaatccgcaataaacttgaagagcaccatttgcttagaactgctgagttgcat
gaaattaatgaagacacagaaattgattcgaaatatttcaatatctcattttatctgact
actcacagtattccggaagcttacggtgtcatagttgatacaccagaaggtaaaatcgtg
catacaggtgacttcaaatttgattttaccccagtaggaactcctgcgaatattgctaaa
atggcaaaaattggagaagaaggtgtgctttgtcttctttctgattctactaatgcttta
gtgcctaactttactttgagcgaacgtgaagtaggacaaaacgttgacaaaattttccgt
aaatgtacaggcagaattatttttgctacatttgcttctaatatttaccgtgtgcaacag
gcagttgaagctgcaatcaaatataatcgcaaaattgtagttttcggccgttcaatggaa
aataatattaaaatcggtatggaattaggctatatcaaagcaccaccagaaacttttatt
gaaccaagcaagatcaattctgtgccaaaacacgaattgttgattttatgtacaggttct
caaggtgaaccgatggctgccctttcaagaattgcgaatggaacacacaaacaaattaaa
attattcctgaagatacagtggtattcagttcatcacctattcctggtaacactaaaagt
attaaccgtacaattaatgcgttatatcgtgcaggtgcggatgttattcatagtaaaatt
tctaatatccacacttccggacacggatctcaaggtgatcaacaattaatgttacgcttg
attcaacctaaattctttatgccgattcatggtgaataccgtatgttaaaagcacactcg
caaacaggtattcaatgcggcgtcgacgaagataatgtgtttatctttgataacggcgat
gtattggcattgacgagagattctgcacgtaaagcaggacgtatcccttctggtgatgtt
ttagttgatggaagcggtatcggcgatattggtaatgtcgtcattcgtgaccgtaaactc
ttatctgaagaaggtttagtaatcgtagtagtaagtattgatttcaacactaatacatta
ctttctggtcctgatattatttctcgcggattcgtttatatgcgtgaatcaggtcattta
atttacgatgcgcagcgtagaattaaaactgatgtcatcagtaaattaaatcaaaataaa
gatattcaatggcatcaaatcaaatcatcgattattgaaacattacaaccttatctttat
gagaaaacagcacgtaaaccgatgattttacctgttattatgaaagtaaatgaagatggc
gaacaaataactaagccatctaaatctaaatcaaattcaagacctaagaaaaataattct
aaagttaaatcatctaataaaaataatgattccaaaaataaccaaggtgggcgtccagca
aaacgtaatactaatggacgaaagcctcagtctaaaaataataaaccacaagctaaaaat
gaatcaggttctaagcaagaaccatcatctcaagcaaaatcaaaaaataaatctgattct
aataaagaatag
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