KEGG   Streptomyces dangxiongensis: D9753_09410
Entry
D9753_09410       CDS       T08044                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sdd  Streptomyces dangxiongensis
Pathway
sdd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sdd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D9753_09410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdd03019]
    D9753_09410
Messenger RNA biogenesis [BR:sdd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     D9753_09410
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: AYN39091
UniProt: A0A3G2JBV8
LinkDB
Position
complement(2135934..2137619)
AA seq 561 aa
MSHPHPELGSPPPLPQGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERIGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLADSTNAEVPGFVPPERDISNVLRTVFANAGKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
HQVVLVCTGSQGEPMAALSRMANRDHQIRIVDGDTVILASSLIPGNENAVYRVINGLTRW
GAHVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLVGGKARISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VIDSSTGKITGGPHVQARGSGIDDSAFVEVLPKVTEVLERSAQDGVVEPHQLQQLIRRTL
GKWVSDRYRRRPMILPVVVEV
NT seq 1686 nt   +upstreamnt  +downstreamnt
ttgagtcatccgcatcctgaactcggctcgcccccgccgttgccccaggggggcctgcgg
gtcaccccgctcggcggcctcggcgagatcggccggaacatgacggtcttcgagtacggc
ggccgtctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gatctgatcctgccggacttctcgtccatccgggaccgtctcgacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggcgtgcccttcctgctccgcgagaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccggatccgcccgtacaccctggaggtggcggagggaaaccgcgagcgcatcggc
cccttcgactgcgagttcgtcgccgtcaaccactccatcccggacgccctcgcggtcgcc
atccgcacccccgccggcatggtcgtccacaccggcgacttcaagatggaccagctcccg
ctggacaaccggctcaccgacctccacgcgttcgcgcggctcagcgaggagggcatcgac
ctgctcctcgccgactcgacgaacgccgaggtcccgggcttcgtcccgcccgagcgggac
atctccaacgtcctgcgcacggtcttcgccaacgccggcaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagatcctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccggtccatggtccgcaacatgggcatcgcccgcgacctcggc
tacctgaaggtcccgccgggcctggtggtcgacgtcaagacgctggacgacctgcccgac
caccaggtggtcctggtctgcacgggctcccagggcgagccgatggcggcactgtcccgc
atggccaaccgcgaccaccagatccgcatcgtcgacggcgacacggtgattctggcgtcc
tcgctgatccccgggaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgcccacgtcgtccacaagggcaacgccaaggtgcacgtctccggccacgcgtccgcg
ggcgagctgctgtacttctacaacatctgtcgcccgaagaacctgatgccggtgcacggc
gagtggcgccacctgcgggccaacgccgagctgggcgcgctgaccggcgtgccccacgac
cgcatcgtcatcgccgaggacggcgtggtggtcgacctcgtcgggggcaaggccaggatc
tccggcaaggtccaggcgggctacgtctacgtcgacggcctctcggtcggtgacgtcggg
gagccggccctgaaggatcgcaagatcctcggtgacgagggcatcatctcggtcttcgtg
gtcatcgactcctcgaccggcaagatcaccggtggcccgcacgtgcaggcccgtggttcc
ggcatcgacgactcggccttcgtcgaggtcctgccgaaggtcacggaggtgctggagcgg
tccgcccaggacggcgtcgtggagccccaccagctccagcagctcatccgccggaccctc
ggcaagtgggtctcggacaggtatcgccgcaggccgatgatcctcccggtggtcgtggag
gtctga

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