Streptomyces dangxiongensis: D9753_09410
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Entry
D9753_09410 CDS
T08044
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sdd
Streptomyces dangxiongensis
Pathway
sdd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D9753_09410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdd03019
]
D9753_09410
Messenger RNA biogenesis [BR:
sdd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D9753_09410
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AYN39091
UniProt:
A0A3G2JBV8
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Position
complement(2135934..2137619)
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AA seq
561 aa
AA seq
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MSHPHPELGSPPPLPQGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERIGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLADSTNAEVPGFVPPERDISNVLRTVFANAGKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
HQVVLVCTGSQGEPMAALSRMANRDHQIRIVDGDTVILASSLIPGNENAVYRVINGLTRW
GAHVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLVGGKARISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VIDSSTGKITGGPHVQARGSGIDDSAFVEVLPKVTEVLERSAQDGVVEPHQLQQLIRRTL
GKWVSDRYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggctcgcccccgccgttgccccaggggggcctgcgg
gtcaccccgctcggcggcctcggcgagatcggccggaacatgacggtcttcgagtacggc
ggccgtctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gatctgatcctgccggacttctcgtccatccgggaccgtctcgacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggcgtgcccttcctgctccgcgagaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccggatccgcccgtacaccctggaggtggcggagggaaaccgcgagcgcatcggc
cccttcgactgcgagttcgtcgccgtcaaccactccatcccggacgccctcgcggtcgcc
atccgcacccccgccggcatggtcgtccacaccggcgacttcaagatggaccagctcccg
ctggacaaccggctcaccgacctccacgcgttcgcgcggctcagcgaggagggcatcgac
ctgctcctcgccgactcgacgaacgccgaggtcccgggcttcgtcccgcccgagcgggac
atctccaacgtcctgcgcacggtcttcgccaacgccggcaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagatcctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccggtccatggtccgcaacatgggcatcgcccgcgacctcggc
tacctgaaggtcccgccgggcctggtggtcgacgtcaagacgctggacgacctgcccgac
caccaggtggtcctggtctgcacgggctcccagggcgagccgatggcggcactgtcccgc
atggccaaccgcgaccaccagatccgcatcgtcgacggcgacacggtgattctggcgtcc
tcgctgatccccgggaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgcccacgtcgtccacaagggcaacgccaaggtgcacgtctccggccacgcgtccgcg
ggcgagctgctgtacttctacaacatctgtcgcccgaagaacctgatgccggtgcacggc
gagtggcgccacctgcgggccaacgccgagctgggcgcgctgaccggcgtgccccacgac
cgcatcgtcatcgccgaggacggcgtggtggtcgacctcgtcgggggcaaggccaggatc
tccggcaaggtccaggcgggctacgtctacgtcgacggcctctcggtcggtgacgtcggg
gagccggccctgaaggatcgcaagatcctcggtgacgagggcatcatctcggtcttcgtg
gtcatcgactcctcgaccggcaagatcaccggtggcccgcacgtgcaggcccgtggttcc
ggcatcgacgactcggccttcgtcgaggtcctgccgaaggtcacggaggtgctggagcgg
tccgcccaggacggcgtcgtggagccccaccagctccagcagctcatccgccggaccctc
ggcaagtgggtctcggacaggtatcgccgcaggccgatgatcctcccggtggtcgtggag
gtctga
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