Streptomyces dangxiongensis: D9753_11510
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Entry
D9753_11510 CDS
T08044
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sdd
Streptomyces dangxiongensis
Pathway
sdd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D9753_11510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdd03400
]
D9753_11510
Enzymes [BR:
sdd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D9753_11510
DNA repair and recombination proteins [BR:
sdd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D9753_11510
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AYN39439
UniProt:
A0A3G2JFL7
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All DBs
Position
2640956..2641843
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AA seq
295 aa
AA seq
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MTPITEVEGRRVTLSNLEKVLYPETGFTKGELLHYYATTAGALLPHLRDRAVSFLRYPDG
PGGQLFFAKNVPPGTPEWVTTAKVPRSSADSPARMVVVQDLPSLVWAANLVTEFHTHQWL
VQTPDEADRLVFDLDPGAPAHVVDCCEVALWLRERLAADGIEAYPKTAGSKGLHLLAAVR
GSSSERTSEYAKALAVEAERAMPRLVVHRMNKSLRPGKVFVDWSQNAARKTTATPYTVRA
RRAPLVSTPVTWEEVADCRSPGQLEFRAGDIAARLQDLGDLMAPLTDPARAAPLP
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctatcacagaggtggaggggcgccgggtcacgctcagcaacctggagaaggtg
ctgtatccggagaccggcttcaccaaaggggagctgctgcactactacgcgaccaccgcc
ggggccctgctgccgcacctgcgcgaccgcgcggtgtccttcctgcgttatccggacggc
cccggcggacaactgttcttcgccaagaacgtgccgccgggtacgcccgagtgggtcacg
accgcgaaggtgccgcgctcgtcggcggacagcccggcccggatggtggtggtgcaggac
ctgcccagcctggtgtgggcggcgaacctggtcaccgagttccacacccaccagtggctg
gtccagacacccgacgaggccgaccggctggtgttcgacctcgatccgggtgcgcccgcg
cacgtcgtggactgctgcgaggtcgccctgtggctgcgtgagcggctcgccgccgacggg
atcgaggcgtacccgaagacggccgggtcgaaggggctgcacctgctggcggcggtgcgc
gggagttcctccgagcggacgtccgagtacgcgaaggcgctggccgtggaggcggagcgg
gcgatgccccggctggtggtgcaccggatgaacaagagcctgcggcccgggaaggtcttc
gtcgactggagccagaacgcggcccgcaagaccacggccaccccgtacaccgtgcgcgcc
cgccgggccccgctggtgtccacgccggtgacctgggaggaggtcgccgactgccgcagc
cccggtcagcttgagttccgggccggggacatcgccgcgcggctccaggacctcggtgac
ctcatggccccgctgacggacccggcgcgggccgcacccctgccctga
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